View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5060_low_3 (Length: 356)
Name: NF5060_low_3
Description: NF5060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5060_low_3 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 17522677 - 17522962
Alignment:
| Q |
19 |
atgaagtagctgttctcggaaatagggttgctgaaaacaaaatttccaatattaagggtgggtttgtgaaagatgtcataactttcatggttatggatga |
118 |
Q |
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| T |
17522677 |
atgaagtagctgttgtcggaaatagggttgctgaaaataaagtttccaatattaagggtgggtttgtgaaagatgtcataactttcatggttatggatga |
17522776 |
T |
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| Q |
119 |
tttggtgattcagcccatgtcaaccatatctagcatcacactgctcaacaagttcaatgtgaaagagatcggtaccttgcaagaaacggtggttgagatg |
218 |
Q |
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| T |
17522777 |
tttggtcattcagcccatgtcaactatatctagcatcacactgctcaacaagtttaatgtgaaagagattggtactctgcaagaaaaagtggttgagatg |
17522876 |
T |
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| Q |
219 |
gggatggatgaggttagtatatattcaatgtgtaaataaacttagtcttgtctaaaatttctgatttgtatttttagatttatatg |
304 |
Q |
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| T |
17522877 |
gggatggatgaggttagtgtatatacaatgtgtaaacaaactcagtcatgtctaaaatttctgatttgttcttttagatttatatg |
17522962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 17016515 - 17016382
Alignment:
| Q |
81 |
tttgtgaaagatgtcataactttcatggttatggatgatttggtgattcagcccatgtcaaccatatctagcatcacactgctcaacaagttcaatgtga |
180 |
Q |
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| T |
17016515 |
tttgtgaaagatgttgtgactttcatggtcatggatgatttgtcaattcagcccatgccgaccttatcaggcattaccatacttaacaagttcaacatca |
17016416 |
T |
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| Q |
181 |
aagagatcggtaccttgcaagaaacggtggttga |
214 |
Q |
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| T |
17016415 |
aagagatgggtaccttacaagaaatggtagttga |
17016382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 17546952 - 17546819
Alignment:
| Q |
81 |
tttgtgaaagatgtcataactttcatggttatggatgatttggtgattcagcccatgtcaaccatatctagcatcacactgctcaacaagttcaatgtga |
180 |
Q |
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| T |
17546952 |
tttgtgaaagatgttgtgactttcatggtcatggatgatttgtcaattcagcccatgccgaccttatcaggcattaccatacttaacaagttcaacatca |
17546853 |
T |
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| Q |
181 |
aagagatcggtaccttgcaagaaacggtggttga |
214 |
Q |
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| T |
17546852 |
aagagatgggtaccttacaagaaatggtagttga |
17546819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 232
Target Start/End: Complemental strand, 8693 - 8529
Alignment:
| Q |
68 |
tattaagggtgggtttgtgaaagatgtcataactttcatggttatggatgatttggtgattcagcccatgtcaaccatatctagcatcacactgctcaac |
167 |
Q |
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| T |
8693 |
tattaagaatggttttgtgaaagatgttgtgacatttatggtaatggacgatttagtggttcagccaatgtcaaccatatcaagcattactttgctgaac |
8594 |
T |
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| Q |
168 |
aagttcaatgtgaaagagatcggtaccttgcaagaaacggtggttgagatggggatggatgaggt |
232 |
Q |
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| T |
8593 |
aaattcaatatcaaggaggttggtaccttgcaggaaaaggttgttgagatgggaatggatgaggt |
8529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 52145346 - 52145250
Alignment:
| Q |
44 |
ggttgctgaaaacaaaatttccaatattaagggtgggtttgtgaaagatgtcataactttcatggttatggatgatttggtgattcagcccatgtca |
140 |
Q |
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| T |
52145346 |
ggttgctaaaaagagagtttccaatattaagagtgggtttgtgaaagatattataatttttatggtgatggatgatttagtgattcagcccatgtca |
52145250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 232
Target Start/End: Complemental strand, 52133470 - 52133319
Alignment:
| Q |
81 |
tttgtgaaagatgtcataactttcatggttatggatgatttggtgattcagcccatgtcaaccatatctagcatcacactgctcaacaagttcaatgtga |
180 |
Q |
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| T |
52133470 |
tttgtgaaagatgttgtgacatttatggtgatggatgatttagtcgttcagccaatgtcaacaatatcaagcattactttgctgaacaaattcaatatca |
52133371 |
T |
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| Q |
181 |
aagagatcggtaccttgcaagaaacggtggttgagatggggatggatgaggt |
232 |
Q |
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| T |
52133370 |
aggaggttggtgcgttgcaggaaaaggttgttgagatgggaatggatgaggt |
52133319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 52145241 - 52145174
Alignment:
| Q |
165 |
aacaagttcaatgtgaaagagatcggtaccttgcaagaaacggtggttgagatggggatggatgaggt |
232 |
Q |
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| T |
52145241 |
aacaaattcaaagtgaaagagattgaaaccttgcaagaaaaggttgttgagatgggaatagatgaggt |
52145174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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