View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5060_low_5 (Length: 303)
Name: NF5060_low_5
Description: NF5060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5060_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 18426665 - 18426385
Alignment:
| Q |
1 |
aagctattaaatcagctttatatgtgcttatagagacgtgcccgttgggtagaaaccgaacaaagatcgtggaagcgggtggaataaccgaactcattga |
100 |
Q |
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| T |
18426665 |
aagctattaaatcagctttatatgtgcttatagagacgtgcccgttgggtagaaaccgaacaaagatcgtggaagcgggtggaataaccgaactcattga |
18426566 |
T |
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| Q |
101 |
actcgagcttgaaaaaccggagaagaatgtgactgagcttgtgttcaatcttttggcacatttgtgttcgtgcgcggatggaagagaacaatttatgagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18426565 |
actcgagcttgaaaaaccggagaagaatgtgactgagcttgtgttcaatcttttggcacatttgtgttcgtgcgcggatggaagagaacaatttatgagg |
18426466 |
T |
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| Q |
201 |
catgcagcgggcatagcgatgatttcaaagaggattttgagagtttcagccgcaaccgatgacctggcgattcaagtactt |
281 |
Q |
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| T |
18426465 |
catgcagcgggcatagcgatgatttcgaagaggattttgagggtttcagccgcaaccgatgacctagcgattcaagtactt |
18426385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 13626470 - 13626743
Alignment:
| Q |
1 |
aagctattaaatcagctttatatgtgcttatagagacgtgcccgttgggtagaaaccgaacaaagatcgtggaagcgggtggaataaccgaactcattga |
100 |
Q |
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|||||||||||||||| ||| ||||||||||| ||| |||||| |||||||||||| |||| | ||| ||||||||||||||| ||||||||||||||| |
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| T |
13626470 |
aagctattaaatcagcgttacatgtgcttataaagatgtgcccattgggtagaaactgaacgaggataatggaagcgggtggaacaaccgaactcattga |
13626569 |
T |
|
| Q |
101 |
actcgagcttgaaaaaccggagaagaatgtgactgagcttgtgttcaatcttttggcacatttgtgttcgtgcgcggatggaagagaacaatttatgagg |
200 |
Q |
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| || | ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| | ||||||| || ||| | |||||||||||| | ||| |
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| T |
13626570 |
aatcaaacttgaaaaatcggagaagaatgtgagagagctcctgttcaatcttttggcacattggcgttcgtgtgctgatcggagagaacaattttttagg |
13626669 |
T |
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| Q |
201 |
catgcagcgggcatagcgatgatttcaaagaggattttgagagtttcagccgcaaccgatgacctggcgattca |
274 |
Q |
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| T |
13626670 |
cacgcagcgggcatagcgatgatttcgaagaggattttgagggtctcagccgcaacagatgacctagcgattca |
13626743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 13527214 - 13527315
Alignment:
| Q |
1 |
aagctattaaatcagctttatatgtgcttatagagacgtgcccg-ttgggtagaaaccgaacaaagatcgtggaagcgggtggaataaccgaactcattg |
99 |
Q |
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||||||||||||||| ||| |||||||||||||||| |||||| |||||| ||| |||||| | |||| ||||||||| ||| ||||| ||||||||| |
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| T |
13527214 |
aagctattaaatcagtgttacatgtgcttatagagacatgcccgtttgggtggaagccgaacgaggatcatggaagcggacggagtaaccaaactcattg |
13527313 |
T |
|
| Q |
100 |
aa |
101 |
Q |
| |
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|| |
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| T |
13527314 |
aa |
13527315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 21767372 - 21767455
Alignment:
| Q |
1 |
aagctattaaatcagctttatatgtgcttatagagacgtgcccgttgggtagaaaccgaacaaagatcgtggaagcgggtggaa |
84 |
Q |
| |
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|||||||| | |||| ||| |||||||||||||||| |||||||||||| ||| |||||| | |||| ||||||||| ||||| |
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| T |
21767372 |
aagctattcattcagtgttacatgtgcttatagagacatgcccgttgggtggaagccgaacgaggatcatggaagcggatggaa |
21767455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 21767446 - 21767499
Alignment:
| Q |
174 |
gcggatggaagagaacaatttatgaggcatgcagcgggcatagcgatgatttca |
227 |
Q |
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|||||||||||||||||| || | ||||| ||||| | |||||||||||||||| |
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| T |
21767446 |
gcggatggaagagaacaactttttaggcacgcagcagacatagcgatgatttca |
21767499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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