View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5061-Insertion-1 (Length: 1001)

Name: NF5061-Insertion-1
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5061-Insertion-1
NF5061-Insertion-1
[»] chr3 (5 HSPs)
chr3 (600-861)||(33511325-33511589)
chr3 (603-693)||(27818714-27818805)
chr3 (628-745)||(24148700-24148815)
chr3 (737-860)||(27818164-27818286)
chr3 (437-478)||(44762482-44762523)
[»] chr5 (4 HSPs)
chr5 (628-763)||(36230332-36230468)
chr5 (379-468)||(22200937-22201038)
chr5 (707-861)||(31645577-31645728)
chr5 (649-715)||(31646289-31646356)
[»] chr4 (6 HSPs)
chr4 (610-822)||(22487604-22487818)
chr4 (627-799)||(46695759-46695929)
chr4 (667-756)||(13035665-13035754)
chr4 (665-857)||(8695192-8695386)
chr4 (628-750)||(13029000-13029120)
chr4 (666-756)||(22087613-22087703)
[»] chr6 (4 HSPs)
chr6 (658-823)||(24638158-24638325)
chr6 (645-775)||(12587932-12588064)
chr6 (666-756)||(33106699-33106789)
chr6 (794-855)||(12586589-12586649)
[»] chr1 (4 HSPs)
chr1 (434-510)||(12854752-12854828)
chr1 (232-298)||(45147440-45147507)
chr1 (666-751)||(30282543-30282628)
chr1 (690-754)||(42378997-42379061)
[»] chr7 (4 HSPs)
chr7 (636-702)||(40954083-40954150)
chr7 (636-751)||(9599560-9599675)
chr7 (636-751)||(9827131-9827246)
chr7 (691-727)||(40954227-40954263)
[»] chr8 (3 HSPs)
chr8 (688-755)||(1336296-1336363)
chr8 (628-687)||(35690675-35690734)
chr8 (666-755)||(16340494-16340583)
[»] chr2 (1 HSPs)
chr2 (674-751)||(42071547-42071624)


Alignment Details
Target: chr3 (Bit Score: 108; Significance: 1e-53; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 600 - 861
Target Start/End: Original strand, 33511325 - 33511589
Alignment:
Q  600 acccagggatggatgcatgtctaatgaggtgtggacttgtgcctacacaaaatattttaaatttgatttttaagtagtataatatagtaatagttgacat 699  Q
    |||||| || |||||||||| |  || ||||||| ||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||    
T  33511325 acccagtgacggatgcatgtgttgtgtggtgtgggcttgtccctacacaaaatattttaatttttatttttaagtaatataatatagtaatagttgacat 33511424  T
Q  700 ttagaccaaatgacctacacttataacaaaatatttctctcttggcccacacttatataacacatggacacaacaatataacctttgttttcga--atat 797  Q
    ||||||||||| |||||||||||||||| ||||||||| || ||||||||||||| || |||| | |||||||||||| |||| |||||| | |  ||||    
T  33511425 ttagaccaaataacctacacttataacacaatatttctatcctggcccacacttaaatcacac-ttgacacaacaatacaacc-ttgtttcctaatatat 33511522  T
Q  798 atttaatgctttcaatt----gatatatatggttccccctatttttcaaaatttctggatccgtcact 861  Q
    ||||||||||| |||||     |||||||| || ||||| | |||||||||||||| |||||||||||    
T  33511523 atttaatgcttccaattaatatatatatatagtaccccc-acttttcaaaatttctagatccgtcact 33511589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 603 - 693
Target Start/End: Complemental strand, 27818805 - 27818714
Alignment:
Q  603 cagggatggatgcatgtctaatgaggtgtggacttgtgcctacacaaaatattttaaatttgat-ttttaagtagtataatatagtaatagt 693  Q
    |||||| |||||||||| |  ||| |||||| ||||||||||||||||||||||| | |||  | |||||||||||||||||||||||||||    
T  27818805 cagggacggatgcatgtgtcttgatgtgtgggcttgtgcctacacaaaatatttttattttattattttaagtagtataatatagtaatagt 27818714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 628 - 745
Target Start/End: Original strand, 24148700 - 24148815
Alignment:
Q  628 gtgtggacttgtgcctacacaaaatattttaaatttgatttttaagtagtataatatagtaatagttgacatttagaccaaatgacctacacttataaca 727  Q
    |||||| ||| ||||| |||||| |||||  |||||| |||||   ||||||||||||||||||||||| |||| |||||||||| | ||||   | |||    
T  24148700 gtgtgggcttatgcctgcacaaactatttagaatttgttttttt--tagtataatatagtaatagttgatattttgaccaaatgatccacaccacttaca 24148797  T
Q  728 aaatatttctctcttggc 745  Q
     || ||||||||||||||    
T  24148798 caacatttctctcttggc 24148815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 860
Target Start/End: Complemental strand, 27818286 - 27818164
Alignment:
Q  737 tctcttggcccacacttatataacacatggacacaacaatataacctttgttttcgaatatattt--aatgctttcaattgatatatatggttcccccta 834  Q
    |||||||||||||||| |||| ||||||| ||||||||| | ||| || |||||| ||||||| |  ||||||||| ||| ||||||||||| |  || |    
T  27818286 tctcttggcccacactaatatcacacatg-acacaacaacacaacatt-gttttcaaatatatatctaatgctttcgattaatatatatggtgctacc-a 27818190  T
Q  835 tttttcaaaatttctggatccgtcac 860  Q
     |||||||||||| ||||||||||||    
T  27818189 cttttcaaaatttatggatccgtcac 27818164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 478
Target Start/End: Complemental strand, 44762523 - 44762482
Alignment:
Q  437 gggtaattttgtcatttcattataatatatatcatatcatgt 478  Q
    ||||||||||||||||| ||| |||||||||| |||||||||    
T  44762523 gggtaattttgtcatttaattgtaatatatataatatcatgt 44762482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 4e-47; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 628 - 763
Target Start/End: Original strand, 36230332 - 36230468
Alignment:
Q  628 gtgtggacttgtgcctacacaaaatattttaaatttg-atttttaagtagtataatatagtaatagttgacatttagaccaaatgacctacacttataac 726  Q
    |||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||    
T  36230332 gtgtgggcttgtgcctacacaaaatattttaaatttttatttttaagtagtataatatagttatagttgacattttgaccaaataacctacacttataac 36230431  T
Q  727 aaaatatttctctcttggcccacacttatataacaca 763  Q
    | |||||||||||||| |||||||||||||| |||||    
T  36230432 acaatatttctctcttcgcccacacttatatcacaca 36230468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 379 - 468
Target Start/End: Original strand, 22200937 - 22201038
Alignment:
Q  379 aagggatgaagatgaattgttgtgaaatgcagtaaccaatttggttgttgag------------tataaagggtaattttgtcatttcattataatatat 466  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||            ||| ||||| ||||||||||||||||||||||||||    
T  22200937 aagggatgaagatgaattgttgtgaaatgcagtgaccaatttggttgttgagatctgcattttttatgaagggcaattttgtcatttcattataatatat 22201036  T
Q  467 at 468  Q
    ||    
T  22201037 at 22201038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 707 - 861
Target Start/End: Complemental strand, 31645728 - 31645577
Alignment:
Q  707 aaatgacctacacttataacaaaatatttctctcttggcccacacttatataacacatggacacaacaatataacctttgttttcgaatatatttaatgc 806  Q
    |||| |||| ||||||||||| |||||||||||||||||||||||||| || |||  | |||||||||| | |||| |||||| | |||||||||||||     
T  31645728 aaataacctccacttataacacaatatttctctcttggcccacacttaaatcaca-tttgacacaacaagacaacc-ttgtttcctaatatatttaatgt 31645631  T
Q  807 tttcaattgatatatatggttccccctatttttcaaaatttctggatccgtcact 861  Q
    || ||||| |||||||| || ||||| | ||||||||| || || ||| ||||||    
T  31645630 ttccaattaatatatatagtgccccc-acttttcaaaaattatgtatctgtcact 31645577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 649 - 715
Target Start/End: Complemental strand, 31646356 - 31646289
Alignment:
Q  649 aaatattttaaatttg-atttttaagtagtataatatagtaatagttgacatttagaccaaatgacct 715  Q
    |||||||||||||||  |||||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  31646356 aaatattttaaatttttatttttaagtagtataatatagtaatagctgacatttagactaaataacct 31646289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 9e-45; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 610 - 822
Target Start/End: Complemental strand, 22487818 - 22487604
Alignment:
Q  610 ggatgcatgtctaatgaggtgtggacttgtgcctacacaaaatattttaaatttg-atttttaagtagtataatatagtaatagttgacatttagaccaa 708  Q
    |||||||||| |  || ||||||| |||||||| ||||||||||||||| ||||  ||||| |||||||||||||||||||||||||| |||||||||||    
T  22487818 ggatgcatgtgtgttgtggtgtgggcttgtgcccacacaaaatattttacatttttattttgaagtagtataatatagtaatagttgatatttagaccaa 22487719  T
Q  709 atgacctacacttataacaaaatatttctctcttggcccacacttatataacacatggacacaacaatataacctttgttttcga--atatatttaatgc 806  Q
    || ||||| ||||||||||   |||||||||||||||||||||||| || ||| || ||||||| ||||||| |||| |||| ||  |||||||||||||    
T  22487718 ataacctatacttataacacgctatttctctcttggcccacacttaaatcaca-attgacacaataatataatctttttttttgaatatatatttaatgc 22487620  T
Q  807 tttcaattgatatata 822  Q
    || ||||| |||||||    
T  22487619 ttccaattaatatata 22487604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 627 - 799
Target Start/End: Original strand, 46695759 - 46695929
Alignment:
Q  627 ggtgtggacttgtgcctacacaaaatattttaaatttg-atttttaagtagtataatatagtaatagttgacatttagaccaaatgacctacacttataa 725  Q
    ||||||| |||||||||||||||||||||||||||||  |||||||  ||| ||||||||||||||||||||||||||||||| | ||||||||||||||    
T  46695759 ggtgtgggcttgtgcctacacaaaatattttaaatttttatttttatatagaataatatagtaatagttgacatttagaccaa-taacctacacttataa 46695857  T
Q  726 caaaatatttctctcttggcccacacttatataacacatggacacaacaatataacctttgttttcgaatatat 799  Q
    || |||||||||||||||||||||||||| || |||| | |||||||||| | |||| ||||||| ||||||||    
T  46695858 cacaatatttctctcttggcccacacttaaatcacac-ttgacacaacaacacaacc-ttgtttttgaatatat 46695929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 667 - 756
Target Start/End: Complemental strand, 13035754 - 13035665
Alignment:
Q  667 ttttaagtagtataatatagtaatagttgacatttagaccaaatgacctacacttataacaaaatatttctctcttggcccacacttata 756  Q
    |||||||||||||||| ||| |||||||||||||| ||||| | |||| |||||||| |||||  |||| ||||||||||||||| ||||    
T  13035754 ttttaagtagtataatgtaggaatagttgacattttgaccacaagacccacacttatcacaaatcatttatctcttggcccacacctata 13035665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 665 - 857
Target Start/End: Original strand, 8695192 - 8695386
Alignment:
Q  665 atttttaagtagtataatatagtaatagttg---acatttagaccaaatgacctacacttataacaaaatatttctctcttggcccacacttatataaca 761  Q
    |||||||||||||||||||||||||||||||   |||||| ||| |||||  | ||||||||||||    |||||| |||| |||||||| || || |||    
T  8695192 atttttaagtagtataatatagtaatagttgattacattttgactaaatggtccacacttataacatgtcatttctttcttagcccacacctacatcaca 8695291  T
Q  762 catggacacaacaatataacctttgttttcga--atatatttaatgctttcaattgatatatatggttccccctatttttcaaaatttctggatccgt 857  Q
    ||| ||||||| || | |||| |||||| | |  |||||||||||||||  |||| |||||||  || || || ||||||| |||||||| |||||||    
T  8695292 cat-gacacaataacacaacc-ttgtttccaaatatatatttaatgcttcgaattaatatatacagtgcctcc-atttttcgaaatttctagatccgt 8695386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 628 - 750
Target Start/End: Complemental strand, 13029120 - 13029000
Alignment:
Q  628 gtgtggacttgtgcctacacaaaatatttta-aatttgatttttaagtagtataatatagtaatagttgacatttagaccaaatgacctacacttataac 726  Q
    |||||| ||||||||||||||||| |||||| ||  | |||||  ||||||||||| ||  |||||||||||||| ||||| |||| | |||||||| ||    
T  13029120 gtgtgggcttgtgcctacacaaaa-attttagaaacttatttt--agtagtataatgtacgaatagttgacattttgaccacatgatccacacttatcac 13029024  T
Q  727 aaaatatttctctcttggcccaca 750  Q
    |||  |||| |||||||| |||||    
T  13029023 aaatcatttatctcttggtccaca 13029000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 666 - 756
Target Start/End: Original strand, 22087613 - 22087703
Alignment:
Q  666 tttttaagtagtataatatagtaatagttgacatttagaccaaatgacctacacttataacaaaatatttctctcttggcccacacttata 756  Q
    ||||| ||||||  ||||||  |||||||||||||| ||||| |||||| |||||||| ||| |  |||||||| ||||| ||||| ||||    
T  22087613 ttttttagtagtgcaatataccaatagttgacattttgaccacatgacccacacttatcacatatcatttctcttttggctcacacctata 22087703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 3e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 658 - 823
Target Start/End: Complemental strand, 24638325 - 24638158
Alignment:
Q  658 aaatttgatttttaagtagtataatatagtaatagttgacatttagaccaaatgacctacacttataacaaaatatttctctcttggcccacacttatat 757  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||||| ||| ||    
T  24638325 aaattttatttttaagtagtataatatagtaatagttgatatttagaccaaataacctacacttgtaacacaatatttctctcttggcccacatttaaat 24638226  T
Q  758 aacacatggacacaacaatataacctttgttt-tcga--atatatttaatgctttcaattgatatatat 823  Q
     |||| | ||||||| || ||||||||| ||| || |  ||||||||||||||||||| | ||||||||    
T  24638225 tacacct-gacacaataagataacctttttttatcaaatatatatttaatgctttcaactaatatatat 24638158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 645 - 775
Target Start/End: Complemental strand, 12588064 - 12587932
Alignment:
Q  645 cacaaaatattttaaatttg-atttttaa---gtagtataatatagtaatagttgacatttagaccaaatgacctacacttataacaaaatatttctctc 740  Q
    |||||||||||||||||||  ||||||||   |||||||||||||||||||||||||||||| | ||||| ||| |||||||||||| ||||||||||||    
T  12588064 cacaaaatattttaaatttttatttttaattagtagtataatatagtaatagttgacatttaaatcaaataacc-acacttataacataatatttctctc 12587966  T
Q  741 ttggcccacacttatataacacatggacacaacaa 775  Q
    |||||||||||||| || |||| | ||||||||||    
T  12587965 ttggcccacacttaaatcacacgt-gacacaacaa 12587932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 666 - 756
Target Start/End: Original strand, 33106699 - 33106789
Alignment:
Q  666 tttttaagtagtataatatagtaatagttgacatttagaccaaatgacctacacttataacaaaatatttctctcttggcccacacttata 756  Q
    ||||||||||||||||| ||  |||||||||||||| ||||| ||||   |||||||| ||||| |||||||||||||||| |||| ||||    
T  33106699 tttttaagtagtataatgtatcaatagttgacattttgaccatatgattcacacttatcacaaattatttctctcttggcctacacatata 33106789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 794 - 855
Target Start/End: Complemental strand, 12586649 - 12586589
Alignment:
Q  794 atatatttaatgctttcaattgatatatatggttccccctatttttcaaaatttctggatcc 855  Q
    |||||||||||| |||||||| |||||||| || ||| | ||||||||||||||||||||||    
T  12586649 atatatttaatgatttcaattaatatatatagtgccctc-atttttcaaaatttctggatcc 12586589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 434 - 510
Target Start/End: Complemental strand, 12854828 - 12854752
Alignment:
Q  434 aaagggtaattttgtcatttcattataatatatatcatatcatgtcattgtcaaggtgaacatcaaacacatgatat 510  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||| |||  ||| ||| ||||||||||||||    
T  12854828 aaagggtaattttgtcatttcattattatatatatcatatcacgtcattatcagagtgcacaccaaacacatgatat 12854752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 45147507 - 45147440
Alignment:
Q  232 atgacattaacatttttcactcatcagcaaacaggtaaggaccca-ttactttctaacaatattttca 298  Q
    ||||||||||||||||||||||| ||||||||| |||||||| || |||||||||||||| |||||||    
T  45147507 atgacattaacatttttcactcaacagcaaacaagtaaggacacatttactttctaacaacattttca 45147440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 666 - 751
Target Start/End: Complemental strand, 30282628 - 30282543
Alignment:
Q  666 tttttaagtagtataatatagtaatagttgacatttagaccaaatgacctacacttataacaaaatatttctctcttggcccacac 751  Q
    ||||||||||  |||||||| |||||||||| |||| ||| |||||||| |||| ||||||| || ||||||||||||| ||||||    
T  30282628 tttttaagtaacataatatattaatagttgatattttgactaaatgacccacacctataacacaacatttctctcttggtccacac 30282543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 690 - 754
Target Start/End: Complemental strand, 42379061 - 42378997
Alignment:
Q  690 tagttgacatttagaccaaatgacctacacttataacaaaatatttctctcttggcccacactta 754  Q
    ||||||||||||||| ||||| |||||||||||||| | ||||||||||| || || ||||||||    
T  42379061 tagttgacatttagatcaaataacctacacttataatacaatatttctcttttagctcacactta 42378997  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 636 - 702
Target Start/End: Original strand, 40954083 - 40954150
Alignment:
Q  636 ttgtgcctacacaaaatattttaaa-tttgatttttaagtagtataatatagtaatagttgacattta 702  Q
    ||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| ||||| |||||    
T  40954083 ttgtgcctacacaaaatattttaaatttttatttttaagtagaataatatagtaatggttgatattta 40954150  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 636 - 751
Target Start/End: Complemental strand, 9599675 - 9599560
Alignment:
Q  636 ttgtgcctacacaaaatattttaaatttgatttttaagtagta-taatatagtaatagttgacatttagaccaaatgacctacacttataacaaaatatt 734  Q
    |||||||| |||||||||||| |||| | |||||| ||| ||| ||||||| |||||||||| |||| ||||||||  || |||| | ||| |  |||||    
T  9599675 ttgtgcctgcacaaaatatttgaaatat-attttttagtggtagtaatatattaatagttgatattttgaccaaatagcccacacctctaaaacgatatt 9599577  T
Q  735 tctctcttggcccacac 751  Q
    ||||| |||||||||||    
T  9599576 tctctgttggcccacac 9599560  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 636 - 751
Target Start/End: Complemental strand, 9827246 - 9827131
Alignment:
Q  636 ttgtgcctacacaaaatattttaaatttgatttttaagtagta-taatatagtaatagttgacatttagaccaaatgacctacacttataacaaaatatt 734  Q
    |||||||| |||||||||||| |||| | |||||| ||| ||| ||||||| |||||||||| |||| ||||||||  || |||| | ||| |  |||||    
T  9827246 ttgtgcctgcacaaaatatttgaaatat-attttttagtggtagtaatatattaatagttgatattttgaccaaatagcccacacctctaaaacgatatt 9827148  T
Q  735 tctctcttggcccacac 751  Q
    ||||| |||||||||||    
T  9827147 tctctgttggcccacac 9827131  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 691 - 727
Target Start/End: Original strand, 40954227 - 40954263
Alignment:
Q  691 agttgacatttagaccaaatgacctacacttataaca 727  Q
    |||||||||||||||||||| ||||||||||||||||    
T  40954227 agttgacatttagaccaaataacctacacttataaca 40954263  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 688 - 755
Target Start/End: Complemental strand, 1336363 - 1336296
Alignment:
Q  688 aatagttgacatttagaccaaatgacctacacttataacaaaatatttctctcttggcccacacttat 755  Q
    |||||||||||||| || || |||| | |||||||| |||||| ||||||||||||||||||||||||    
T  1336363 aatagttgacattttgatcacatgaaccacacttatcacaaaacatttctctcttggcccacacttat 1336296  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 628 - 687
Target Start/End: Complemental strand, 35690734 - 35690675
Alignment:
Q  628 gtgtggacttgtgcctacacaaaatattttaaatttgatttttaagtagtataatatagt 687  Q
    |||||||||| || ||||||||| |||||  |||||| ||||| ||||||||||||||||    
T  35690734 gtgtggacttatgactacacaaactatttagaatttgtttttttagtagtataatatagt 35690675  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 666 - 755
Target Start/End: Complemental strand, 16340583 - 16340494
Alignment:
Q  666 tttttaagtagtataatatagtaatagttgacatttagaccaaatgacctacacttataacaaaatatttctctcttggcccacacttat 755  Q
    ||||| ||||||||||| ||  ||||||||||||||   ||| |||  |||||||||| |||||  |||||| ||||| |||||||||||    
T  16340583 ttttttagtagtataatgtatcaatagttgacattttagccacatggtctacacttatcacaaataatttctatcttgacccacacttat 16340494  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 674 - 751
Target Start/End: Complemental strand, 42071624 - 42071547
Alignment:
Q  674 tagtataatatagtaatagttgacatttagaccaaatgacctacacttataacaaaatatttctctcttggcccacac 751  Q
    ||||||||| || ||||||||| ||||| || || |||| | |||||||| |||||  ||||||||||||| ||||||    
T  42071624 tagtataatgtactaatagttggcattttgatcacatgatccacacttatcacaaatcatttctctcttggtccacac 42071547  T

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