View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5061-Insertion-12 (Length: 261)
Name: NF5061-Insertion-12
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5061-Insertion-12 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 95 - 261
Target Start/End: Complemental strand, 47198696 - 47198530
Alignment:
| Q |
95 |
tcccaaacttaaataagcacagcagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatct |
194 |
Q |
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| T |
47198696 |
tcccaaacttaaataagcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatct |
47198597 |
T |
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| Q |
195 |
agtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagat |
261 |
Q |
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| T |
47198596 |
agtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagat |
47198530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 111 - 261
Target Start/End: Complemental strand, 47186141 - 47185991
Alignment:
| Q |
111 |
gcacagcagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
210 |
Q |
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| T |
47186141 |
gcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
47186042 |
T |
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| Q |
211 |
gtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagat |
261 |
Q |
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| T |
47186041 |
gtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagat |
47185991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 257
Target Start/End: Complemental strand, 47212705 - 47212623
Alignment:
| Q |
175 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
257 |
Q |
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| T |
47212705 |
acactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaa |
47212623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 47198783 - 47198753
Alignment:
| Q |
8 |
cttcaataggtatattctttgtctctggaat |
38 |
Q |
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| T |
47198783 |
cttcaataggtatattctttgtctctggaat |
47198753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 257
Target Start/End: Original strand, 748538 - 748668
Alignment:
| Q |
127 |
aaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaatgtctcactaggaatta |
226 |
Q |
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| T |
748538 |
aaagcctgagcaatgacaaaggtgaacaacatgttgacacaaactgtgacactttgtccagctgatcgagtctcgagtggaaatgtctcacttggaataa |
748637 |
T |
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| Q |
227 |
accaaccaagtggaccccatgaccatgcaaa |
257 |
Q |
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| T |
748638 |
gccaaccgagaggaccccaagaccaagcaaa |
748668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 1356896 - 1356817
Alignment:
| Q |
178 |
ctttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
257 |
Q |
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| T |
1356896 |
ctttgtccagctgatctaatctccaatggaaaaatctcacttggtactaaccaacctagtggaccccacgaccatccaaa |
1356817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 36202747 - 36202702
Alignment:
| Q |
212 |
tctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
257 |
Q |
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| T |
36202747 |
tctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaa |
36202702 |
T |
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