View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5061-Insertion-2 (Length: 794)
Name: NF5061-Insertion-2
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5061-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 663; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 8 - 754
Target Start/End: Complemental strand, 43476503 - 43475764
Alignment:
| Q |
8 |
cttcgctggtttatttagaaagacatttttcccctttgacttctcccatgattacgagaaatatgccattgacgaacatatgcaacaacaataagagtgc |
107 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43476503 |
cttcgctggtt-atttagaaagacatttttcccctttgacttctcccatgattacgagaaatgtgccattgacgaacatatgcaacaacaataagagtgt |
43476405 |
T |
|
| Q |
108 |
ggatagaggtcatcttatcttggtcatgagtagatgtttcttcataatccatactataatgttgaaagaatcagttagccacaagacgagctttgtaatg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43476404 |
ggatagaggtcatcttatcttggtcatgagtagatgtttcttcataatccatactataatgttgaaagaatcagttagccacaagacgagctttgtaatg |
43476305 |
T |
|
| Q |
208 |
atcaactgatccatcaaactagctttgatcttgtatgtcaaatgtgacccaataccacattttcttgctcgaagaggtattatctcaaatatacgttttc |
307 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43476304 |
atcaaccgatccatcaaactagctttgatcttgtatgtcaaatgtgacccaataccacattttcttgctcgaagaggtattatctcaaatatatgttttc |
43476205 |
T |
|
| Q |
308 |
caaagttttcttacaagatgagtctttttagtgaaagacagtaggtcaaattcataaggatgactgttggggccaaaatgagaccctagaaaggagagtg |
407 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43476204 |
caaagtcttcttacaagatgagtctttttagtgaaaaacagtaggtcaaattcataaggatgactgttggggccaaaatgag-----agaaaggagagtg |
43476110 |
T |
|
| Q |
408 |
tcaaggaattagaaccatacgaaaaggaaatgaccaaaacttgagggcatttgtctaatatgttcaaaaggatttatgaagccttcattttgattaggaa |
507 |
Q |
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| T |
43476109 |
tcaaggaattagaaccatacgaaaaggaaatgaccaaaacttgagggcatttgtccaatacgttcaaaaggatttatgaagccttcattttgattaggaa |
43476010 |
T |
|
| Q |
508 |
aacaaagaaaaataataattttaaaccgttggtagctcaatgatttggggaataaatgcttgaatgttggctctaaaggaccataacaagatgtatttag |
607 |
Q |
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|||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43476009 |
aacaaagaaaaaaaaaatttttaaaccgttggtagctcaatgatttggggaataaatgcttgaatgttggctctaaaggaccataacaagatgtatttag |
43475910 |
T |
|
| Q |
608 |
ttaccttaccataaacttcaaaggggaccattctaaatgcagtgtagaaaggggcaatcagatgtcaaatagtaatacacaaatggtttattaaataata |
707 |
Q |
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| T |
43475909 |
ttaccttaccataaacttcaaaggggaccattctaaatgcagtgtagaaa-gggcaatcagatgtcaaatagtaatacacaaatggtttattaaataata |
43475811 |
T |
|
| Q |
708 |
aatgaattataaaggcattttaaacggatatcacaaaagggccactc |
754 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
43475810 |
aatgaattataaaggcattttaaacggatatcacaaaagggcaactc |
43475764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 65 - 243
Target Start/End: Original strand, 47937437 - 47937613
Alignment:
| Q |
65 |
gaaatatgccattgacgaacatatgcaacaacaataagagtgcggatagaggtcatcttatcttggtcatgagtagatgtttcttcataatccatactat |
164 |
Q |
| |
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||||||||||| ||||| | | |||||||| |||||||||||||||||| |||||| || | | ||| | ||||||||||||||||||||| || |
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| T |
47937437 |
gaaatatgccactgacgtatagatgcaacagcaataagagtgcggatagtggtcatttttgcaacgg---gagcaaatgtttcttcataatccataccat |
47937533 |
T |
|
| Q |
165 |
aatgttgaaagaatcagttagccacaagacgagctttgtaatgatcaactgatccatcaaac-tagctttgatcttgtat |
243 |
Q |
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| |||||| ||||| ||||| ||||||||||||||||| | |||||||| |||||| || ||| ||||||||||||| |
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| T |
47937534 |
actgttgagcgaatcccttagcaacaagacgagctttgtagcgttcaactgacccatcagacttagttttgatcttgtat |
47937613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 47631013 - 47631116
Alignment:
| Q |
141 |
atgtttcttcataatccatactataatgttgaaagaatcagttagccacaagacgagctttgtaatgatcaactgatccatcaaac-tagctttgatctt |
239 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| | |||| ||||| ||||||||||||||||| | |||||||| |||||| || ||| ||||||||| |
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| T |
47631013 |
atgtttcttcataatccataccatactgttgagaaaatcccttagcaacaagacgagctttgtagcgttcaactgacccatcagacttagttttgatctt |
47631112 |
T |
|
| Q |
240 |
gtat |
243 |
Q |
| |
|
|||| |
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|
| T |
47631113 |
gtat |
47631116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 10052692 - 10052795
Alignment:
| Q |
141 |
atgtttcttcataatccatactataatgttgaaagaatcagttagccacaagacgagctttgtaatgatcaactgatccatcaaac-tagctttgatctt |
239 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| ||||| ||||| ||||||||||||||||| | |||||||| |||||| || ||| ||||||||| |
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| T |
10052692 |
atgtttcttcataatccataccatactgttgagcgaatcccttagcaacaagacgagctttgtagcgttcaactgacccatcagacttagttttgatctt |
10052791 |
T |
|
| Q |
240 |
gtat |
243 |
Q |
| |
|
|||| |
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|
| T |
10052792 |
gtat |
10052795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 46821174 - 46821071
Alignment:
| Q |
141 |
atgtttcttcataatccatactataatgttgaaagaatcagttagccacaagacgagctttgtaatgatcaactgatccatcaaac-tagctttgatctt |
239 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| ||||| ||||| ||||||||||||||||| | |||||||| |||||| || ||| ||||||||| |
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| T |
46821174 |
atgtttcttcataatccataccatactgttgagtgaatcccttagcaacaagacgagctttgtagcgttcaactgacccatcagacttagttttgatctt |
46821075 |
T |
|
| Q |
240 |
gtat |
243 |
Q |
| |
|
|||| |
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|
| T |
46821074 |
gtat |
46821071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 9878643 - 9878727
Alignment:
| Q |
143 |
gtttcttcataatccatactataatgttgaaagaatcagttagccacaagacgagctttgtaatgatcaactgatccatcaaact |
227 |
Q |
| |
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|||||||||||||| | || ||| |||||| | ||| |||||||||||||||||||||||| | ||||| || |||||||||| |
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| T |
9878643 |
gtttcttcataatctaaaccatattgttgagaatatcctttagccacaagacgagctttgtaacgctcaacagacccatcaaact |
9878727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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