View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5061-Insertion-9 (Length: 115)
Name: NF5061-Insertion-9
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5061-Insertion-9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 4e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 52801752 - 52801644
Alignment:
| Q |
7 |
accaccacaccaccgccggccagccgccgcgaccactcacatgtcaccttcttctccatccatcacccgccaacgcatcctcctgacctcctgcatcttc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
52801752 |
accaccacaccaccgccggccagccgccgcgaccactcacatgtcaccttcttctccatccatcacccgccggcgcatcctcctgacctcctccatcttc |
52801653 |
T |
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| Q |
107 |
tgtgttatc |
115 |
Q |
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||||||||| |
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| T |
52801652 |
tgtgttatc |
52801644 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 34213096 - 34213059
Alignment:
| Q |
7 |
accaccacaccaccgccggccagccgccgcgaccactc |
44 |
Q |
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| T |
34213096 |
accaccacaccaccgccggtcagccgccgcgaccactc |
34213059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 12003172 - 12003135
Alignment:
| Q |
7 |
accaccacaccaccgccggccagccgccgcgaccactc |
44 |
Q |
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| T |
12003172 |
accaccacaccaccgccggtcagccgccgcgaccactc |
12003135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 14654780 - 14654743
Alignment:
| Q |
7 |
accaccacaccaccgccggccagccgccgcgaccactc |
44 |
Q |
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| T |
14654780 |
accaccacaccaccgccggtcagccgccgcgaccactc |
14654743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 33754171 - 33754132
Alignment:
| Q |
7 |
accaccacaccaccgccggccagccgccgcgaccactcac |
46 |
Q |
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|||||||||||||||| ||||||| ||| ||||||||||| |
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| T |
33754171 |
accaccacaccaccgctggccagctgccacgaccactcac |
33754132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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