View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5061_high_11 (Length: 362)
Name: NF5061_high_11
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5061_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 40237820 - 40237490
Alignment:
| Q |
13 |
cagatttcaaaaccatgaaattaagacaaagaagtaatnnnnnnn-cgacctttaagtgaagggtaccaccaccaaattgggaaccagttttattatgaa |
111 |
Q |
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| T |
40237820 |
cagatttcaaaaccatgaaattaagacaaagaagtaataaaaaaaacgacctttaagtgaagggtaccaccaccaaattgggaaccagttttattatgaa |
40237721 |
T |
|
| Q |
112 |
actccatccaagcttgattcttgtaaaagcaagcacctttccactcaggggtgttgttaggggaagaagcagcagcaacgaagacagggagaatatcaac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40237720 |
actccatccaagcttgattcttgtaaaagcaagcacctttccactcaggggtgttgttaggggaagaagcagcagcaacgaagacagggagaatatcaac |
40237621 |
T |
|
| Q |
212 |
agcgctatggagggagttgatgattggccatgaaatttgtttgggcatcaatggaagcaagtctcgtgggtgaaatggtgatttgaaggtagagaattga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40237620 |
agcgctatggagggagttgatgattggccatgaaatttgtttgggcatcaatggaagcaagtctcgtgggtgaaatggtgatttgaaggtagagaattga |
40237521 |
T |
|
| Q |
312 |
aggcatgtgaggaagatgagaagcgtggtta |
342 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
40237520 |
aggcatgtgaggaagatgagaagcgtggtta |
40237490 |
T |
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