View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5061_high_19 (Length: 248)
Name: NF5061_high_19
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5061_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 31034838 - 31035062
Alignment:
| Q |
1 |
cttcaaattgagtgatgaattatgggttcttcaatttcagaggaagttgttgttgtgagttcgattgagagatggatgatgtatggtgatggaaagaggt |
100 |
Q |
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| T |
31034838 |
cttcaaattgagtgatgaattatgggttcttcaatttcagaggaagttgttgttgtgagttcgattgagagatggatgatgtatggtgatggaaagaggt |
31034937 |
T |
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| Q |
101 |
tgtggtgaggttgttgatggtgtgtggaccgtgtaatttttccatatttgtgttgaagataaagaatggtaatttcatctggagagagaaaggctttcac |
200 |
Q |
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| T |
31034938 |
tgtggtgaggttgttgatggtgtgtggaccgtgtaattttttcatatttgtgttgaagataaagaagggtaatttcatccggagagagaaaggctttcac |
31035037 |
T |
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| Q |
201 |
tcgattgaagatttgttgttgttgt |
225 |
Q |
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| T |
31035038 |
tcgattgaagatttgttgttgttgt |
31035062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 31027961 - 31028100
Alignment:
| Q |
84 |
tggtgatggaaagaggttgtggtgaggttgttgatggtgtgtggaccgtgtaatttttccatatttgtgttgaagataaagaatggtaatttcatctgga |
183 |
Q |
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| T |
31027961 |
tggtgatggaaataggttgtggtgaggttgttgatggtgtgtggaccacgtaatttttccatatttgtgttgaagataaagaattgtaatttcatccg-- |
31028058 |
T |
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| Q |
184 |
gagagaaaggctttcactcgattgaagatttgttgttgttgt |
225 |
Q |
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| T |
31028059 |
gagagaaaggctttcactcgattgaagatttgttgttgttgt |
31028100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 13435482 - 13435272
Alignment:
| Q |
6 |
aattgagtgatgaattatgggttcttcaatttcagaggaagttgttgttgtgagttcgattgagagatggatgatgtatggtgatggaaagaggttgtgg |
105 |
Q |
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| T |
13435482 |
aattgagtgatgaattatgagttcttcagattcataggaagttgttgtc---aattcgattgagagatggatgatgt-tggtgatggaa-gaggttgtgg |
13435388 |
T |
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| Q |
106 |
tgaggttgttgatggtgtgtggaccgtgtaat-ttttccatatttgtgttgaagataaagaatggtaatttcatctggagagagaaaggctttcactcga |
204 |
Q |
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| T |
13435387 |
tgaggttgttgatggtgtgtggaccgtgtaattttttccagatttgtgttgaagataaagaagggtaattttatc--cagaggaaaagactttcactcga |
13435290 |
T |
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| Q |
205 |
ttgaagatttgttgttgt |
222 |
Q |
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| T |
13435289 |
ttgaagaattgttgttgt |
13435272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 32687729 - 32687680
Alignment:
| Q |
6 |
aattgagtgatgaattatgggttcttcaatttcagaggaagttgttgttg |
55 |
Q |
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||||||| |||||||| ||| |||||||||||||||||||||||| |||| |
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| T |
32687729 |
aattgagagatgaattttggattcttcaatttcagaggaagttgtagttg |
32687680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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