View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5061_high_20 (Length: 242)

Name: NF5061_high_20
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5061_high_20
NF5061_high_20
[»] chr6 (2 HSPs)
chr6 (1-229)||(34933421-34933640)
chr6 (52-225)||(34926958-34927131)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 34933421 - 34933640
Alignment:
Q  1 tatatgataatcaacttgagttttgacaaaataaagaagaagaatgaaaatacatagataccttgcgaatgaagcaacgattatgaaaatatgattgaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34933421 tatatgataatcaacttgagttttgacaaaataaagaagaagaatgaaaatacatagataccttgcgagtgaagcaacgattatgaaaatatgattgaaa 34933520  T
Q  101 gagatacaaacgaaaactgtcatgcaatgcaaccctagagagacaaattcaacaaattcttctcattctacttataagaagcttcaacccaagagattac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34933521 gagatacaaacgaaaactgtcatgcaatgcaaccctagagag---------acaaattcttctcattctacttataagaagcttcaaccctagagattac 34933611  T
Q  201 gaacgaaaactgtcatgcaatgaaaatac 229  Q
    ||||||||||| |||||||||||||||||    
T  34933612 gaacgaaaactatcatgcaatgaaaatac 34933640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 34926958 - 34927131
Alignment:
Q  52 acatagataccttgcgaatgaagcaacgattatgaaaatatgattgaaagagatacaaacgaaaactgtcatgcaatgcaaccctagagagacaaattca 151  Q
    |||||||||||||| || ||||||||||| |||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||    
T  34926958 acatagataccttgagagtgaagcaacgaatatgaaaataagattgaaagagataagaacgaaaactgtcatgcaatgcaaccctagagagacaagttca 34927057  T
Q  152 acaaattcttctcattctacttataagaagcttcaacccaagagattacgaacgaaaactgtcatgcaatgaaa 225  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  34927058 acaaattcttctcattctacgtataagaagcttcaaccctagagattacgaaaaaaaactgtcatgcaatgaaa 34927131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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