View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5061_high_22 (Length: 215)
Name: NF5061_high_22
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5061_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 39281113 - 39280909
Alignment:
| Q |
1 |
cccatcttgcaaagaccattgatcaagctgttataagtgactatatctggtgtcagaccacgctgaatcatatcccgaagaaattgaagagcgtcattta |
100 |
Q |
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| T |
39281113 |
cccatcttgcaaagaccattgatcaggctgttataagtgactatatctggtgtcagaccacgctgaatcatatcccgaagaaactgaagagcgtcattta |
39281014 |
T |
|
| Q |
101 |
cttttccagtcctacagaaggaattgatcagaatattacaagagttgatactaggaaaaatttcttcaccaaacatttgttcaatcaatcccaaacattt |
200 |
Q |
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| T |
39281013 |
cttttccagtcctacagaaggaattgatcagaatattacaagagttaatactaggaaaaatttcttcaccaaacatttgttcaatcaatcccaaacattt |
39280914 |
T |
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| Q |
201 |
ctctg |
205 |
Q |
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||||| |
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| T |
39280913 |
ctctg |
39280909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 17349097 - 17349294
Alignment:
| Q |
7 |
ttgcaaagaccattgatcaagctgttataagtgactatatctggtgtcagaccacgctgaatcatatcccgaagaaattgaagagcgtcatttacttttc |
106 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||| || |||||||| |||||||| ||||||||||||||||||||| |
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| T |
17349097 |
ttgcaaagaccattaatcaagctgttataagtgactatatctggtgtcaaaccacgatggatcatatctcgaagaaaccgaagagcgtcatttacttttc |
17349196 |
T |
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| Q |
107 |
cagtcctacagaaggaattgatcagaatattacaagagttgatactaggaaaaatttcttcaccaaacatttgttcaatcaatcccaaacatttctct |
204 |
Q |
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| T |
17349197 |
caatactacagaaggaattgctcagaatgttacaagagttaatactaggaaaaatccctttcccaaacatttcctcaatcaatcccaaacctttctct |
17349294 |
T |
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