View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5061_high_3 (Length: 441)
Name: NF5061_high_3
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5061_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 158 - 426
Target Start/End: Original strand, 36135038 - 36135306
Alignment:
| Q |
158 |
gaaaatgatttgatcgagcacaagggaaagcttgacgttgcatctagtgaggctaagcttttaagtgagtaggagcatgtttgatattgaaggtgatcct |
257 |
Q |
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| T |
36135038 |
gaaaatgatttgatcgagcacaagggaaagcttgacgttgcatctagtgaggctaagcttttaagcgagtaggagcatgtttgatattgaaggtgatcct |
36135137 |
T |
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| Q |
258 |
tgatggtttttcttttcagcatgaaggtgctcgtgaaacctttaaatatgctcaaaatcagatgaaaagcataacagaaaaaattatatcaaaaactgca |
357 |
Q |
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| T |
36135138 |
tgatggtttttcttttcagcatgaaggtgctcgtgaaacctttaaatatgctcaaaatcagatgaaaagcataacagaaaaaattatatcaaaaactgca |
36135237 |
T |
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| Q |
358 |
agcatttctcaaattaagagtgatatagaaaagaagaggcatgaagcattggaaactcagagtggaaga |
426 |
Q |
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| T |
36135238 |
agcatttctcaaattaagagtgatatagaaaagaagaggcatgaagcattggaaactcagagtggaaga |
36135306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 36134856 - 36135004
Alignment:
| Q |
10 |
attatactaaattgattccatatacaaaaatgaaaccaatatatactatgagcagtagtggatattaattgtagttttcttttcttgacggtttcaaatt |
109 |
Q |
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| T |
36134856 |
attatattaaattgattccatatacaaaaatgaaaccaatatatactatgagcagtagtggatattaattgtagttttcttttcttgacggtttcaaatt |
36134955 |
T |
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| Q |
110 |
aattttttattattggtaaacagttgaaactgagaaattccactctgag |
158 |
Q |
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| T |
36134956 |
aattttttattattggtaaacagttgaaactgagaaattcctctctgag |
36135004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 239 - 391
Target Start/End: Original strand, 30816073 - 30816224
Alignment:
| Q |
239 |
tgatattgaaggtgatccttgatggtttttcttttcagcatgaaggtgctcgtgaaacctttaaatatgctcaaaatcagatgaaaagcataacagaaaa |
338 |
Q |
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|||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| |
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| T |
30816073 |
tgatgttgaaggtgattcttgatg-tttttcttttcagcatgaaggtgctcgtgaagcctttaaaggtgctcaaaatcagatgaaaattataacagaaac |
30816171 |
T |
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| Q |
339 |
aattatatcaaaaactgcaagcatttctcaaattaagagtgatatagaaaaga |
391 |
Q |
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| T |
30816172 |
aattaaatcaaaaactgcaagcatttctcaaattaagagtaatatagaaaaga |
30816224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 30815043 - 30815193
Alignment:
| Q |
10 |
attatactaaattgattccatatacaaaaatgaaaccaatatatactatgagcagtagtggatattaattgtag-ttttcttttcttgacggtttcaaat |
108 |
Q |
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|||||| |||||||||||||||| || ||||| | ||||||||| ||| ||||||||||||| ||||||||||| |||||||| ||| | ||||||| |
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| T |
30815043 |
attatattaaattgattccatatgcacaaatggagccaatatattctacgagcagtagtggagattaattgtagtttttctttgtttgtcaaattcaaat |
30815142 |
T |
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| Q |
109 |
t-aattttttattattggtaaacagttgaaactgagaaattccactctgag |
158 |
Q |
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| T |
30815143 |
tgttttttttattattggcaaacagttgaaactgagaaattccgctctgag |
30815193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 30815227 - 30815295
Alignment:
| Q |
158 |
gaaaatgatttgatcgagcacaagggaaagcttgacgttgcatctagtgaggctaagcttttaagtgag |
226 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| |||| |
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| T |
30815227 |
gaaaaagatttgatcgagcacaagggaaagcttgaggttgcatctagtgaggccaagcttctaaatgag |
30815295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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