View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5061_high_4 (Length: 426)

Name: NF5061_high_4
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5061_high_4
NF5061_high_4
[»] chr1 (5 HSPs)
chr1 (12-93)||(7701557-7701638)
chr1 (12-93)||(7751425-7751506)
chr1 (258-318)||(7701332-7701392)
chr1 (258-318)||(7751671-7751731)
chr1 (53-93)||(51667510-51667550)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 7701638 - 7701557
Alignment:
Q  12 agcagagagaaaatctgaaagagaatgccaattcgaacacgaagtttaaggctttggcgatttcagatgataggggtcgtgc 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7701638 agcagagagaaaatctgaaagagaatgccaattcgaacacgaagtttaaggctttggcgatttcagatgataggggtcgtgc 7701557  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 7751425 - 7751506
Alignment:
Q  12 agcagagagaaaatctgaaagagaatgccaattcgaacacgaagtttaaggctttggcgatttcagatgataggggtcgtgc 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7751425 agcagagagaaaatctgaaagagaatgccaattcgaacacgaagtttaaggctttggcgatttcagatgataggggtcgtgc 7751506  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 7701392 - 7701332
Alignment:
Q  258 aaagggggagtgatagagatcgtggtgataggcgcgatagagatgatacaagaggcaatgc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7701392 aaagggggagtgatagagatcgtggtgataggcgcgatagagatgatacaagaggcaatgc 7701332  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 7751671 - 7751731
Alignment:
Q  258 aaagggggagtgatagagatcgtggtgataggcgcgatagagatgatacaagaggcaatgc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7751671 aaagggggagtgatagagatcgtggtgataggcgcgatagagatgatacaagaggcaatgc 7751731  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 51667510 - 51667550
Alignment:
Q  53 aagtttaaggctttggcgatttcagatgataggggtcgtgc 93  Q
    ||||| ||||||||||| |||||||||||||||| ||||||    
T  51667510 aagttcaaggctttggcaatttcagatgatagggatcgtgc 51667550  T

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