View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5061_high_5 (Length: 424)

Name: NF5061_high_5
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5061_high_5
NF5061_high_5
[»] chr6 (3 HSPs)
chr6 (281-394)||(34256628-34256740)
chr6 (218-251)||(34256736-34256769)
chr6 (71-123)||(29142032-29142083)
[»] chr4 (2 HSPs)
chr4 (80-155)||(48948142-48948217)
chr4 (74-137)||(9570794-9570857)
[»] chr2 (2 HSPs)
chr2 (80-155)||(6907323-6907398)
chr2 (82-145)||(4719355-4719418)
[»] chr1 (1 HSPs)
chr1 (80-145)||(42809622-42809687)


Alignment Details
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 281 - 394
Target Start/End: Complemental strand, 34256740 - 34256628
Alignment:
Q  281 atacggatatatagaaagatagatttatttcaaaaaatgtccaaaggagtgaagatagtagcaaaaattgtacttagtt-ccaaataatgactcaaaact 379  Q
    ||||||||||| ||||||| | ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||  ||||    
T  34256740 atacggatatagagaaagacaaatttattgcaaaaaaagtccaaaggagtgaagatagtagcaaaaaatgtacttagttcccaaataatgactc--aact 34256643  T
Q  380 gggaaaaattgaaca 394  Q
    |||||||||||||||    
T  34256642 gggaaaaattgaaca 34256628  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 34256769 - 34256736
Alignment:
Q  218 tcttcaagactaaaccaagtcaatctagaatacg 251  Q
    |||||||||||||||||||||||||| |||||||    
T  34256769 tcttcaagactaaaccaagtcaatctggaatacg 34256736  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 29142083 - 29142032
Alignment:
Q  71 tgcatttgtaattgttttccactagaaagactgaattcagctaatataataat 123  Q
    ||||||| ||||||||||| |||| | |||||||| |||||||||||||||||    
T  29142083 tgcatttataattgttttc-actaaagagactgaactcagctaatataataat 29142032  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 48948217 - 48948142
Alignment:
Q  80 aattgttttccactagaaagactgaattcagctaatataataatctatatggtaccttttgaagttgaagtgtgac 155  Q
    ||||||||| || || |||||||||| ||| ||| ||| ||||||||||||| ||||||||||||| ||| |||||    
T  48948217 aattgtttttcattataaagactgaactcatctattatcataatctatatggaaccttttgaagttaaagcgtgac 48948142  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 9570857 - 9570794
Alignment:
Q  74 atttgtaattgttttccactagaaagactgaattcagctaatataataatctatatggtacctt 137  Q
    |||| |||||||||||||||| ||||||  || |||||||||||| || | |||||||||||||    
T  9570857 atttataattgttttccactacaaagaccaaactcagctaatatagtagtgtatatggtacctt 9570794  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 6907398 - 6907323
Alignment:
Q  80 aattgttttccactagaaagactgaattcagctaatataataatctatatggtaccttttgaagttgaagtgtgac 155  Q
    ||||||||| || || |||||||||| ||| ||| ||| ||||||||||||| ||||||||||||| | |||||||    
T  6907398 aattgtttttcattataaagactgaactcatctattatcataatctatatggaaccttttgaagttaacgtgtgac 6907323  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 4719355 - 4719418
Alignment:
Q  82 ttgttttccactagaaagactgaattcagctaatataataatctatatggtaccttttgaagtt 145  Q
    ||||||| || || |||||||||| ||| ||| ||| ||||||||||||| |||||||||||||    
T  4719355 ttgttttgcattataaagactgaactcatctattatcataatctatatggaaccttttgaagtt 4719418  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 42809687 - 42809622
Alignment:
Q  80 aattgttttccactagaaagactgaattcagctaatataataatctatatggtaccttttgaagtt 145  Q
    ||||||||| || || |||||||||| ||| ||| ||| ||||||||||||| |||||||||||||    
T  42809687 aattgtttttcattataaagactgaactcatctattatcataatctatatggaaccttttgaagtt 42809622  T

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