View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5061_high_6 (Length: 410)
Name: NF5061_high_6
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5061_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 13 - 393
Target Start/End: Complemental strand, 56440226 - 56439846
Alignment:
| Q |
13 |
aaaatagcatgtttctcattttaaaagtcgcactgcagttttactataacccgtgaccctgtgatttctgtcaaaggcctgtttattattagggaagcat |
112 |
Q |
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| T |
56440226 |
aaaatagcatgtttctcattttaaaagtcgcactgcagttttactataacccgtgaccctgtgatttctgtcaaaggcctgtttattattagggaagcat |
56440127 |
T |
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| Q |
113 |
tttatatatttgcattttggtttgacattgcaggcaattgaagcagcgattgaactcaatcttaaaacagtagaagcaggagctcagggtgaacataaga |
212 |
Q |
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| T |
56440126 |
tttatatatttgcattttggtttgacatcgcaggcaattgaagcagcgattgaactcaatcttaaaacagtagaagcaggagctcagggtgaacataaga |
56440027 |
T |
|
| Q |
213 |
ttgagcgtggatatcttccagtgacaacatatagctgccattaccttattgatgaagattttaggaaagctatagaagattttttagttcgtgaatcttc |
312 |
Q |
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| T |
56440026 |
ttgagcgtggatatcttccagtgacaacatatagctgccattaccttattgatgaagattttaggaaagctatagaagattttttagttcgtgaatcttc |
56439927 |
T |
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| Q |
313 |
tcaggtatggtgcagcggggatttatattttgttccttgtctttctaagttcactttgttctgatattacttgttaatcat |
393 |
Q |
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| T |
56439926 |
tcaggtatggtgcagcggggatttatattttgttccttgtctttctaagttcactttgttctgatattacttgttaatcat |
56439846 |
T |
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