View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5061_low_1 (Length: 483)

Name: NF5061_low_1
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5061_low_1
NF5061_low_1
[»] chr5 (5 HSPs)
chr5 (17-430)||(38921527-38921939)
chr5 (251-433)||(35968322-35968504)
chr5 (17-211)||(35968502-35968685)
chr5 (36-80)||(16727903-16727947)
chr5 (42-80)||(16306739-16306777)
[»] chr7 (5 HSPs)
chr7 (17-433)||(41739694-41740109)
chr7 (172-249)||(45295793-45295870)
chr7 (172-261)||(45291650-45291745)
chr7 (231-261)||(38516924-38516954)
chr7 (42-79)||(25272069-25272106)
[»] chr1 (5 HSPs)
chr1 (17-433)||(35063204-35063611)
chr1 (18-80)||(26529581-26529643)
chr1 (18-72)||(36574035-36574089)
chr1 (339-401)||(14512054-14512116)
chr1 (42-79)||(49917485-49917522)
[»] chr4 (6 HSPs)
chr4 (17-427)||(30829999-30830407)
chr4 (17-220)||(52190144-52190358)
chr4 (146-261)||(31409574-31409688)
chr4 (36-80)||(31409401-31409445)
chr4 (15-72)||(52189256-52189313)
chr4 (94-142)||(8479843-8479891)
[»] chr2 (4 HSPs)
chr2 (273-433)||(4754488-4754648)
chr2 (15-80)||(4753598-4753663)
chr2 (18-72)||(31622039-31622093)
chr2 (42-72)||(36669089-36669119)
[»] chr8 (4 HSPs)
chr8 (42-220)||(17864490-17864679)
chr8 (15-80)||(32565560-32565625)
chr8 (15-79)||(3870838-3870902)
chr8 (17-70)||(17863538-17863591)
[»] chr3 (4 HSPs)
chr3 (99-261)||(19801947-19802090)
chr3 (15-80)||(36163453-36163518)
chr3 (43-72)||(20884324-20884353)
chr3 (17-80)||(19801858-19801919)
[»] chr6 (5 HSPs)
chr6 (15-80)||(30758798-30758863)
chr6 (15-79)||(18191816-18191880)
chr6 (172-261)||(9448463-9448558)
chr6 (43-80)||(21396392-21396429)
chr6 (15-80)||(31855721-31855786)


Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 430
Target Start/End: Original strand, 38921527 - 38921939
Alignment:
Q  17 caaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactccgttatactcatagacgagggaccaaaatgaccg 116  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||      
T  38921527 caaaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactctgttatactcatagatgagggaccaaaatgacaa 38921626  T
Q  117 caatcatgtttctgccttcatcttcttcaatcttcttcaatgcccccaattcctttcatcttctccaactctactcatgaactcatgctcaccaacacct 216  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||    
T  38921627 caatcatgtttctgccatcatcttcttcaatcttcttcaatgcccccaattcctt-catcttctccaacactactcatgaactcatgatcaccaacacct 38921725  T
Q  217 atgcctagaaatgatcatattcaaaatcaaaattcaaaattgattcactcatgctcaaactttacaaaatcccacttctaacaatatcacttaggtgcag 316  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38921726 atgcccagaagtgatcatattcaaaatcaaaattcaaaattgattcactcatgctcaaactttacaaaattccacttctaacaatatcacttaggtgcag 38921825  T
Q  317 ctgtttggattgggggaggtacacaaactgtccaactgtgtggcagtgtttagcctacagttggttgtgtttgtttactgatttttgttgcccgcttttt 416  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  38921826 ctgtttggattcggggaggtacacaaactgtccaactgtgtggcagtgtttagcctacagttggttgtgtttgtttactgatttttgttgctcgcttttc 38921925  T
Q  417 ataaggtgcagctg 430  Q
    ||||||||||||||    
T  38921926 ataaggtgcagctg 38921939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 251 - 433
Target Start/End: Complemental strand, 35968504 - 35968322
Alignment:
Q  251 caaaattgattcactcatgctcaaactttacaaaatcccacttctaacaatatcacttaggtgcagctgtttggattgggggaggtacacaaactgtcca 350  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35968504 caaacttgattcactcatgctcaaactttacaaaatcccacttctaacaatatcacttaggtgcagctgtctggattgggggaggtacacaaactgtcca 35968405  T
Q  351 actgtgtggcagtgtttagcctacagttggttgtgtttgtttactgatttttgttgcccgctttttataaggtgcagctgcag 433  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  35968404 actgtgtggcggtgtttagcctacagttggttgtgtttgtttactgatttttgttgctcgcttttcataaggtgcagctgcag 35968322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 35968685 - 35968502
Alignment:
Q  17 caaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactccgttatactcatagacgagggaccaaaatgaccg 116  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||      
T  35968685 caaaaactcccccaattattgttttgttagtcaaatgcatccaaaacgttaacttggtgttaactttgttatactcatagatgagggaccaaaatgacaa 35968586  T
Q  117 caatcatgtttctgccttcatcttcttcaatcttcttcaatgcccccaattcctttcatcttctccaactctactcatgaactcatgctcaccaa 211  Q
    |||||||||||| ||| |||||||||          |||| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||    
T  35968585 caatcatgtttccgccatcatcttct----------tcaaggccccgaattcc-ttcatcttctccaactctactcatgaactcatgcccaccaa 35968502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 16727903 - 16727947
Alignment:
Q  36 tgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    |||| ||||||||||||||||||||||| |||||||| |||||||    
T  16727903 tgttccgttagtcaaatgcatccaaaacattaacttgatgttaac 16727947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 16306777 - 16306739
Alignment:
Q  42 gttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  16306777 gttagtcaaatgcatctaaaacgttaacttggagttaac 16306739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 433
Target Start/End: Original strand, 41739694 - 41740109
Alignment:
Q  17 caaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactccgttatactcatagacgagggaccaaaatgaccg 116  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||      
T  41739694 caaaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactctgttatactcatagatgagggatcaaaatgacaa 41739793  T
Q  117 caatcatgtttctgccttcatcttcttcaatcttcttcaatgcccccaattcctttcatcttctccaactctactcatgaactcatgctcaccaacacct 216  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||    
T  41739794 caatcatgtttctgccatcatctttttcaatcttcttcaatgcccccaattcctt-catcttctccaacactactcatgaactcatgctcaccagcacct 41739892  T
Q  217 atgcctagaaatgatcatattcaaaatcaaaattcaaaattgattcactcatgctcaaactttacaaaatcccacttctaacaatatcacttaggtgcag 316  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41739893 atgcccagaagtgatcatattcaaaatcaaaattcaaaattgattcactcatgctcaaactttacaaaatctcacttctaacaatatcacttaggtgcag 41739992  T
Q  317 ctgtttggattgggggaggtacacaaactgtccaactgtgtggcagtgtttagcctacagttggttgtgtttgtttactgatttttgttgcccgcttttt 416  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||     
T  41739993 ctgtctggattgggggaggtacacaaactgtccaactgtgtggcagtgtttagcctacaattggttgtgtttgtttactgatttttgttgctcgcttttc 41740092  T
Q  417 ataaggtgcagctgcag 433  Q
    |||||||||||||||||    
T  41740093 ataaggtgcagctgcag 41740109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 45295870 - 45295793
Alignment:
Q  172 tcatcttctccaactctactcatgaactcatgctcaccaacacctatgcctagaaatgatcatattcaaaatcaaaat 249  Q
    ||||||||||||||  | ||||| |||||||| |||||||||| | || |||||||| |||||||||| | |||||||    
T  45295870 tcatcttctccaacagtgctcataaactcatgttcaccaacacatctgactagaaattatcatattcatattcaaaat 45295793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 45291745 - 45291650
Alignment:
Q  172 tcatcttctccaactctactcatgaactcatgctcaccaacacctatgcctagaaatgatcatattca------aaatcaaaattcaaaattgatt 261  Q
    ||||||||||||||  | | ||| |||||||| |||||||||| | || |||||||| ||||||||||      ||||||||||||||||||||||    
T  45291745 tcatcttctccaacagtgcacataaactcatgttcaccaacacatctgactagaaattatcatattcatattcaaaatcaaaattcaaaattgatt 45291650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 261
Target Start/End: Original strand, 38516924 - 38516954
Alignment:
Q  231 tcatattcaaaatcaaaattcaaaattgatt 261  Q
    |||||||||||||||||||||||||||||||    
T  38516924 tcatattcaaaatcaaaattcaaaattgatt 38516954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 25272106 - 25272069
Alignment:
Q  42 gttagtcaaatgcatccaaaacgttaacttggtgttaa 79  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  25272106 gttagtcaaatgcattcaaaacgttaacttagtgttaa 25272069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 433
Target Start/End: Complemental strand, 35063611 - 35063204
Alignment:
Q  17 caaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactccgttatactcatagacgagggaccaaaatgaccg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  35063611 caaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactccgttatactcatagacgagggaccaaaatgacaa 35063512  T
Q  117 caatcatgtttctgccttcatcttcttcaatcttcttcaatgcccccaattcctttcatcttctccaactctactcatgaactcatgctcaccaacacct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||        |||||||||||||    
T  35063511 caatcatgtttctgccttcatcttcttcaatcttcttcaatgcccccaattcctt-catcttctccaacactactcatg--------ctcaccaacacct 35063421  T
Q  217 atgcctagaaatgatcatattcaaaatcaaaattcaaaattgattcactcatgctcaaactttacaaaatcccacttctaacaatatcacttaggtgcag 316  Q
    ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  35063420 atgcccataaatgatcatattcaaaatcaaaattcaaaattgattcactcatgctcaaactttataaaatcccacttctaacaatatcacttaggtgtag 35063321  T
Q  317 ctgtttggattgggggaggtacacaaactgtccaactgtgtggcagtgtttagcctacagttggttgtgtttgtttactgatttttgttgcccgcttttt 416  Q
     ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  35063320 ttgtttggattgggggaggtacacaaactgtccaactgtgtggccgtgtttagcctacagttggttgtgtttgtttactgatttttgttgctcgcttttc 35063221  T
Q  417 ataaggtgcagctgcag 433  Q
    |||||||| ||||||||    
T  35063220 ataaggtgtagctgcag 35063204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 26529581 - 26529643
Alignment:
Q  18 aaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    |||||||||| ||||  |||||  ||||||||||||||||||||||||||||||| |||||||    
T  26529581 aaaaactccctcaatgtttgttctgttagtcaaatgcatccaaaacgttaacttgatgttaac 26529643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 36574035 - 36574089
Alignment:
Q  18 aaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttg 72  Q
    |||||||||| ||||   |||| ||||||||||||||||||||||||||||||||    
T  36574035 aaaaactccctcaatgtctgttccgttagtcaaatgcatccaaaacgttaacttg 36574089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 401
Target Start/End: Complemental strand, 14512116 - 14512054
Alignment:
Q  339 acaaactgtccaactgtgtggcagtgtttagcctacagttggttgtgtttgtttactgatttt 401  Q
    |||||| | ||||||||| |||||| |||||| | |||||||||| |||||||||||| ||||    
T  14512116 acaaacagcccaactgtgcggcagtttttagcgttcagttggttgggtttgtttactggtttt 14512054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 49917485 - 49917522
Alignment:
Q  42 gttagtcaaatgcatccaaaacgttaacttggtgttaa 79  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  49917485 gttagtcaaatgcatccaaaatgttaacttgatgttaa 49917522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Original strand, 30829999 - 30830407
Alignment:
Q  17 caaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactccgttatactcatagacgagggaccaaaatgaccg 116  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||      
T  30829999 caaaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaactctgttatactcatagatgagggaccaaaatgaca- 30830097  T
Q  117 caatcatgtttctgccttcatcttcttcaatcttcttcaatgcccccaattcctttcatcttctccaactctactcatgaactcatgctcaccaacacct 216  Q
    |||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| |||||||| |||| ||||||||||||||||||||||||||||||    
T  30830098 caatcatgtttctgccatcatctttttcaatcttcttcaatgccctcaattcctt-catcttcttcaacactactcatgaactcatgctcaccaacacct 30830196  T
Q  217 atgcctagaaatgatcatattcaaaatcaaaattcaaaattgattcactcatgctcaaactttacaaaatcccacttctaacaatatcacttaggtgcag 316  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  30830197 atgcccagaagtgatcatattcaaaatcaaaattcaaaattgattcactcatgctcaaactttacaaaatctcacttctaacaatattacttaggtgcag 30830296  T
Q  317 ctgtttggattgggggaggtacacaaactgtccaactgtgtggcagtgtttagcctacagttggttgtgtttgtttactgatttttgttgcccgcttttt 416  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  30830297 ctgtctggattgggggaggtacacaaactgtccaactgtgtggcagtgtttagcctacagttggttgtgtttgtttactgatttttgttgctcgcttttc 30830396  T
Q  417 ataaggtgcag 427  Q
    |||||||||||    
T  30830397 ataaggtgcag 30830407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 52190358 - 52190144
Alignment:
Q  17 caaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaact------------ccgttatactcatagacgaggga 104  Q
    ||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||| |            |||||||||||||||||||||||    
T  52190358 caaaaactcccccaatgtctgttttgttagtcaaatgcatccaaaacgttaacttggtgttaaatgtgctgatgtgtccgttatactcatagacgaggga 52190259  T
Q  105 ccaaaatgaccgcaatcatgtttctgccttcatcttcttcaatcttcttcaatgcccccaattcctttcatcttctccaactctactcatgaactcatgc 204  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  52190258 ccaaaatgacaacaatcatgtttctgccttcatcttcttcaatcttcttcaatgccctcaattcc-ttcatcttctccaacactactcatgaactcatgc 52190160  T
Q  205 tcaccaacacctatgc 220  Q
    ||||||| ||||||||    
T  52190159 tcaccaatacctatgc 52190144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 146 - 261
Target Start/End: Original strand, 31409574 - 31409688
Alignment:
Q  146 atcttcttcaatgcccccaattcctttcatcttctccaactctactcatgaactcatgctcaccaacacctatgcctagaaatgatcatattcaaaatca 245  Q
    ||||||||||||||| |||||||||| ||||||||||||| ||| |||| |||||||||||| |||||||| | || ||||||||| |||||||||||||    
T  31409574 atcttcttcaatgcctccaattcctt-catcttctccaacactattcataaactcatgctcaacaacacctctacccagaaatgatgatattcaaaatca 31409672  T
Q  246 aaattcaaaattgatt 261  Q
    ||||||||||||||||    
T  31409673 aaattcaaaattgatt 31409688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 31409401 - 31409445
Alignment:
Q  36 tgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  31409401 tgttccgttagtcaaatgcatccaaaacgttaacttggtgttaac 31409445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 52189256 - 52189313
Alignment:
Q  15 atcaaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttg 72  Q
    ||||||||||| | ||||   |||| ||||||||||||||||||||||||||||||||    
T  52189256 atcaaaaactcgctcaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 52189313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 8479843 - 8479891
Alignment:
Q  94 tagacgagggaccaaaatgaccgcaatcatgtttctgccttcatcttct 142  Q
    |||||||||||||||||||| |  ||| ||||| |||||||||||||||    
T  8479843 tagacgagggaccaaaatgatcagaattatgttcctgccttcatcttct 8479891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 8e-62; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 273 - 433
Target Start/End: Complemental strand, 4754648 - 4754488
Alignment:
Q  273 aaactttacaaaatcccacttctaacaatatcacttaggtgcagctgtttggattgggggaggtacacaaactgtccaactgtgtggcagtgtttagcct 372  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||| || ||||||||||||| |||||||||||||||||| |||||||||||||||    
T  4754648 aaactttacaaaatcccacttctaacaatttcactcaggggcagctgtctgaattgggggaggtaaacaaactgtccaactgtgcggcagtgtttagcct 4754549  T
Q  373 acagttggttgtgtttgtttactgatttttgttgcccgctttttataaggtgcagctgcag 433  Q
    |||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||    
T  4754548 acagttggttgtgtttgtttactgatttctgttgcccgtttttcataaggtgcagctgcag 4754488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 4753598 - 4753663
Alignment:
Q  15 atcaaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    ||||||||||||| ||||   ||||| |||||||||||||||||||||||||||||||||||||||    
T  4753598 atcaaaaactccctcaatgtatgttttgttagtcaaatgcatccaaaacgttaacttggtgttaac 4753663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 31622093 - 31622039
Alignment:
Q  18 aaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttg 72  Q
    |||||||||| ||||  ||||| |||| |||||||||||||||||||||||||||    
T  31622093 aaaaactccctcaatgtttgttccgtttgtcaaatgcatccaaaacgttaacttg 31622039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 72
Target Start/End: Complemental strand, 36669119 - 36669089
Alignment:
Q  42 gttagtcaaatgcatccaaaacgttaacttg 72  Q
    |||||||||||||||||||||||||||||||    
T  36669119 gttagtcaaatgcatccaaaacgttaacttg 36669089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 42 - 220
Target Start/End: Complemental strand, 17864679 - 17864490
Alignment:
Q  42 gttagtcaaatgcatccaaaacgttaacttggtgttaact------------ccgttatactcatagacgagggaccaaaatgaccgcaatcatgtttct 129  Q
    |||||||||||||||||||||| ||||||||||||||| |            || |||||||||||||| ||||||||||||||| ||||||||||||||    
T  17864679 gttagtcaaatgcatccaaaacattaacttggtgttaattgtgttgatgtgtccattatactcatagactagggaccaaaatgacagcaatcatgtttct 17864580  T
Q  130 gccttcatcttcttcaatcttcttcaatgcccccaattcctttcatcttctccaactctactcatgaactcatgctcaccaacacctatgc 220  Q
    |||||||||||||||||||||||||||||  | ||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  17864579 gccttcatcttcttcaatcttcttcaatgttctcaattcc-ttcatcttcttcaacactactcatgaactcatgctcaccaacacctatgc 17864490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 32565625 - 32565560
Alignment:
Q  15 atcaaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    ||||||||||||||||||    |||  ||||||||||||||||||||||||||||||| |||||||    
T  32565625 atcaaaaactcccccaatgtacgttatgttagtcaaatgcatccaaaacgttaacttgatgttaac 32565560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 3870838 - 3870902
Alignment:
Q  15 atcaaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaa 79  Q
    ||||||||||||||||||  ||||| |||||||||| | | ||||||||||||| || |||||||    
T  3870838 atcaaaaactcccccaatagttgttccgttagtcaatttcgtccaaaacgttaagttcgtgttaa 3870902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 17863538 - 17863591
Alignment:
Q  17 caaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaact 70  Q
    |||||||||| |||||   |||| ||| ||||||||||||||||||||||||||    
T  17863538 caaaaactcctccaatgtatgttccgtcagtcaaatgcatccaaaacgttaact 17863591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 99 - 261
Target Start/End: Original strand, 19801947 - 19802090
Alignment:
Q  99 gagggaccaaaatgaccgcaatcatgtttctgccttcatcttcttcaatcttcttcaatgcccccaattcctttcatcttctccaactctactcatgaac 198  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||||||||          |||||||||||||| ||||||||||| | ||||||          
T  19801947 gagggaccaaaatgaccacaattatgtttctgccttcaacttcttcaat----------gcccccaattcctt-catcttctccatcactactc------ 19802029  T
Q  199 tcatgctcaccaacacctatgcctagaaatgatcatattcaaaatcaaaattcaaaattgatt 261  Q
      |||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||    
T  19802030 --atgctcaccaacacctatgcctagaaattatcatattcaaaatctaaattcgaaattgatt 19802090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 36163453 - 36163518
Alignment:
Q  15 atcaaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    ||||||||||||||||||    |||  |||||||||||||||||||||||||||||||||||||||    
T  36163453 atcaaaaactcccccaatgtacgttatgttagtcaaatgcatccaaaacgttaacttggtgttaac 36163518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 72
Target Start/End: Original strand, 20884324 - 20884353
Alignment:
Q  43 ttagtcaaatgcatccaaaacgttaacttg 72  Q
    ||||||||||||||||||||||||||||||    
T  20884324 ttagtcaaatgcatccaaaacgttaacttg 20884353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 19801858 - 19801919
Alignment:
Q  17 caaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    |||||||||||||| ||  || || |||||||||||  ||||||||||||||||| ||||||||    
T  19801858 caaaaactcccccattt--tgatttgttagtcaaatttatccaaaacgttaactttgtgttaac 19801919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 30758863 - 30758798
Alignment:
Q  15 atcaaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    ||||||||||||| ||||   ||||| |||||||||||||||||||||| ||||||||||||||||    
T  30758863 atcaaaaactccctcaatgtatgttttgttagtcaaatgcatccaaaacattaacttggtgttaac 30758798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 18191816 - 18191880
Alignment:
Q  15 atcaaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaa 79  Q
    ||||||||||||||||||   ||||  ||||||||||||||||||||||||||||||||| ||||    
T  18191816 atcaaaaactcccccaatgtatgttatgttagtcaaatgcatccaaaacgttaacttggtattaa 18191880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 9448558 - 9448463
Alignment:
Q  172 tcatcttctccaactctactcatgaactcatgctcaccaacacctatgcctagaaatga------tcatattcaaaatcaaaattcaaaattgatt 261  Q
    ||||||||||||||  | ||||| |||||||| |||||||||| | || |||||||| |      |||||||||||||||||||||||||||||||    
T  9448558 tcatcttctccaacagtgctcataaactcatgttcaccaacacatttgtctagaaattatcatattcatattcaaaatcaaaattcaaaattgatt 9448463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 21396392 - 21396429
Alignment:
Q  43 ttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  21396392 ttagtcaaatacatccaaaacgctaacttggtgttaac 21396429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 31855721 - 31855786
Alignment:
Q  15 atcaaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttggtgttaac 80  Q
    |||||||||||||| |||   ||||  |||||||||||| ||||||||| |||| |||||||||||    
T  31855721 atcaaaaactcccctaatgtatgttatgttagtcaaatgtatccaaaacattaatttggtgttaac 31855786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University