View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5061_low_13 (Length: 337)

Name: NF5061_low_13
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5061_low_13
NF5061_low_13
[»] chr7 (4 HSPs)
chr7 (17-331)||(24906989-24907303)
chr7 (179-254)||(18264575-18264650)
chr7 (174-247)||(23869296-23869369)
chr7 (189-257)||(24823039-24823107)
[»] chr1 (4 HSPs)
chr1 (17-302)||(31302245-31302526)
chr1 (189-257)||(25244983-25245051)
chr1 (179-257)||(25275089-25275167)
chr1 (189-257)||(46244306-46244374)
[»] chr6 (1 HSPs)
chr6 (179-257)||(26857966-26858044)
[»] chr5 (4 HSPs)
chr5 (179-255)||(8933907-8933983)
chr5 (179-257)||(5708120-5708198)
chr5 (189-246)||(9272896-9272953)
chr5 (189-257)||(10369651-10369719)
[»] scaffold0102 (1 HSPs)
scaffold0102 (179-257)||(14385-14463)
[»] chr4 (1 HSPs)
chr4 (174-256)||(41189587-41189669)
[»] chr3 (4 HSPs)
chr3 (199-257)||(9129510-9129568)
chr3 (199-257)||(9137617-9137675)
chr3 (203-257)||(34365439-34365493)
chr3 (189-257)||(41397773-41397841)
[»] chr2 (2 HSPs)
chr2 (179-257)||(17893953-17894031)
chr2 (179-257)||(43323718-43323796)


Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 24906989 - 24907303
Alignment:
Q  17 caagttatatgaaaatagaagtaagcatttggttgagagagaagctgtggattacatttctaataagaagaagaaaattatggacgaaagggcaaggtta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24906989 caagttatatgaaaatagaagtaagcatttggttgagagagaagctgtggattacatttctaataagaagaagaaaattatggacgaaagggcaaggtta 24907088  T
Q  117 aacgtcccatttataatctagagtcgcatgtaacgacgtttctaatataagaagaagaaaaattgtttggtagatggattagatggattttgtactggag 216  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24907089 aacgtcccatttataatctagagttgcatgtaacgacgtttctaatataagaagaagaaaaattgtttggtagatggattagatggattttgtactggag 24907188  T
Q  217 ggattggatgattatggatttggtggatcacattgccacccttctgtaacgttactttcattttatacctcggttggttatttgaatttccacattttcc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24907189 ggattggatgattatggatttggtggatcacattgccacccttatgtaacgttactttcattttatacctcggttggttatttgaatttccacattttcc 24907288  T
Q  317 ttgagctcattgtta 331  Q
    |||||||||||||||    
T  24907289 ttgagctcattgtta 24907303  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 18264575 - 18264650
Alignment:
Q  179 ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgcca 254  Q
    ||||||| | |||||||| ||||||||||||| |||| ||||||||||  ||||||| |  ||||||| |||||||    
T  18264575 ttgtttgatggatggattggatggattttgtagtggatggattggatggatatggatctcatggatcatattgcca 18264650  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 23869296 - 23869369
Alignment:
Q  174 aaaaattgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcac 247  Q
    |||||||||||||| |||||||  ||| ||||||||| ||||   || ||||||| |||||||| |||||||||    
T  23869296 aaaaattgtttggtggatggatctgatagattttgtagtggattaatcggatgataatggatttagtggatcac 23869369  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 24823039 - 24823107
Alignment:
Q  189 gatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc 257  Q
    ||||||||||||||||||| || | ||| |||||||||  ||||||| |  ||||||| ||||||||||    
T  24823039 gatggattagatggattttatagtagagagattggatggatatggatctcatggatcatattgccaccc 24823107  T

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Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 31302526 - 31302245
Alignment:
Q  17 caagttatatgaaaatagaagtaagcatttggttgagagagaagctgtggattacatttctaataagaagaagaaaattatggacgaaagggcaaggtta 116  Q
    ||||||||||| |||||||||||||||||||| ||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |    
T  31302526 caagttatatgcaaatagaagtaagcatttggctgagagagaggctgtggaatacgtttctaataagaagaagaaaattatggacgaaagggcaaggtga 31302427  T
Q  117 aacgtcccatttataatctagagtcgcatgtaacgacgtttctaatataagaagaagaaaaattgtttggtagatggattagatggattttgtactggag 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  ||||||||  |||||||||||||||||||| ||||||||||||||||||| |||    
T  31302426 aacgtcccatttataatctagagtcgcatgtaacgacatttcta--ataagaag--gaaaaattgtttggtagatgaattagatggattttgtactcgag 31302331  T
Q  217 ggattggatgattatggatttggtggatcacattgccacccttctgtaacgttactttcattttatacctcggttggttatttgaa 302  Q
    ||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  31302330 ggattggatggatatggatttggtggatcacattgccacccttatgtaacgttactttaattttatacctcagttggttatttgaa 31302245  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 25245051 - 25244983
Alignment:
Q  189 gatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc 257  Q
    |||||||| ||||||||||||| |||| ||||||||||  ||||||| |  ||||||| ||||||||||    
T  25245051 gatggatttgatggattttgtagtggatggattggatggatatggatctcatggatcatattgccaccc 25244983  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 25275167 - 25275089
Alignment:
Q  179 ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc 257  Q
    ||||||| | |||||||| ||||||||||||| |||| ||||||||||  |||| || |  ||||||| ||||||||||    
T  25275167 ttgtttgatggatggattggatggattttgtagtggatggattggatggatatgaatctcatggatcatattgccaccc 25275089  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 46244306 - 46244374
Alignment:
Q  189 gatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc 257  Q
    |||||||| ||||||||||||| |||| |||| |||||  |||||||||  ||||||  ||||||||||    
T  46244306 gatggattggatggattttgtagtggatggatcggatggatatggatttcatggatctaattgccaccc 46244374  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 26858044 - 26857966
Alignment:
Q  179 ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc 257  Q
    ||||||| |||||||||| ||||||||||||| |||| ||||||||||| ||||||| |  ||||||| ||||||||||    
T  26858044 ttgtttgatagatggattggatggattttgtagtggatggattggatgaatatggatctcatggatcatattgccaccc 26857966  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 8933907 - 8933983
Alignment:
Q  179 ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccac 255  Q
    ||||||| | |||||||| ||||||||||||| |||| ||||||||||| ||||||| |  ||||||| ||||||||    
T  8933907 ttgtttgatggatggattggatggattttgtagtggatggattggatgaatatggatctcatggatcatattgccac 8933983  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 5708198 - 5708120
Alignment:
Q  179 ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc 257  Q
    ||||||| | |||||||| ||||||||||||| ||||  |||||||||  ||||||| |  ||||||| ||||||||||    
T  5708198 ttgtttgatggatggattggatggattttgtagtggatagattggatggatatggatctcatggatcatattgccaccc 5708120  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 9272896 - 9272953
Alignment:
Q  189 gatggattagatggattttgtactggagggattggatgattatggatttggtggatca 246  Q
    |||||||| ||||||||||||| |||| ||||||||||  ||||||| || |||||||    
T  9272896 gatggattggatggattttgtagtggatggattggatggatatggatctgatggatca 9272953  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 10369651 - 10369719
Alignment:
Q  189 gatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc 257  Q
    |||||||| ||||||||||||| |||| |||| |||||  |||||||||  ||||||  ||||||||||    
T  10369651 gatggattggatggattttgtagtggatggatcggatggatatggatttcatggatctaattgccaccc 10369719  T

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Target: scaffold0102 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 14385 - 14463
Alignment:
Q  179 ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc 257  Q
    ||||||| | |||||||| ||||||||||||| |||| ||||||||||  ||||||| |  ||||||| ||||||||||    
T  14385 ttgtttgatggatggattggatggattttgtagtggatggattggatggatatggatctcatggatcatattgccaccc 14463  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 256
Target Start/End: Complemental strand, 41189669 - 41189587
Alignment:
Q  174 aaaaattgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccacc 256  Q
    |||| ||||||| | |||||||| ||||||||||||| |||| ||||||||||  ||||||| |  ||||||| |||||||||    
T  41189669 aaaatttgtttgatggatggattggatggattttgtagtggatggattggatggatatggatctcatggatcatattgccacc 41189587  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 9129510 - 9129568
Alignment:
Q  199 atggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc 257  Q
    ||||||||||||  ||| ||| ||||||| ||||||||||||||||||| |||||||||    
T  9129510 atggattttgtagcggatggaatggatgaatatggatttggtggatcactttgccaccc 9129568  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 9137617 - 9137675
Alignment:
Q  199 atggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc 257  Q
    ||||||||||||  ||| ||| ||||||| ||||||||||||||||||| |||||||||    
T  9137617 atggattttgtagcggatggaatggatgaatatggatttggtggatcactttgccaccc 9137675  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 34365493 - 34365439
Alignment:
Q  203 attttgtactggagggattggatgattatggatttggtggatcacattgccaccc 257  Q
    |||||||| || | |||||||||| |||| |||||||||||||| ||||||||||    
T  34365493 attttgtagtgaatggattggatggttatagatttggtggatcaaattgccaccc 34365439  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 41397841 - 41397773
Alignment:
Q  189 gatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc 257  Q
    |||||||| ||||||||||||| |||| |||| |||||  |||||||||  ||||||  ||||||||||    
T  41397841 gatggattggatggattttgtagtggatggatcggatggatatggatttcatggatctaattgccaccc 41397773  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 17894031 - 17893953
Alignment:
Q  179 ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc 257  Q
    |||||||||||||||||| ||||||| || |  |||| ||||||||||  |||||||||| ||||||  ||||||||||    
T  17894031 ttgtttggtagatggattggatggatattatggtggatggattggatgtatatggatttgatggatcctattgccaccc 17893953  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 43323796 - 43323718
Alignment:
Q  179 ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc 257  Q
    ||||||| | |||||||| ||||||||||||| |||| ||||||||||  ||| ||| |  ||||||| ||||||||||    
T  43323796 ttgtttgatggatggattggatggattttgtagtggatggattggatggatatagatctcatggatcatattgccaccc 43323718  T

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