View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5061_low_14 (Length: 323)

Name: NF5061_low_14
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5061_low_14
NF5061_low_14
[»] chr2 (11 HSPs)
chr2 (71-311)||(11836163-11836398)
chr2 (10-58)||(23367024-23367072)
chr2 (10-52)||(22388138-22388180)
chr2 (10-55)||(1646522-1646567)
chr2 (10-55)||(40756908-40756953)
chr2 (10-52)||(1102736-1102778)
chr2 (10-52)||(3519142-3519184)
chr2 (10-52)||(12969740-12969782)
chr2 (10-52)||(39938405-39938447)
chr2 (11-52)||(37673743-37673784)
chr2 (14-55)||(34224393-34224434)
[»] chr1 (12 HSPs)
chr1 (10-58)||(23045273-23045321)
chr1 (10-52)||(284568-284610)
chr1 (10-52)||(24771906-24771948)
chr1 (10-52)||(40783657-40783699)
chr1 (12-52)||(321863-321903)
chr1 (10-52)||(33082979-33083021)
chr1 (10-56)||(47037848-47037894)
chr1 (10-52)||(23526474-23526516)
chr1 (14-52)||(3943766-3943804)
chr1 (14-52)||(41959812-41959850)
chr1 (10-52)||(51064754-51064796)
chr1 (14-52)||(51064995-51065033)
[»] chr8 (17 HSPs)
chr8 (10-55)||(7147148-7147193)
chr8 (10-55)||(40058300-40058345)
chr8 (10-52)||(11646325-11646367)
chr8 (10-52)||(30999524-30999566)
chr8 (10-52)||(36068315-36068357)
chr8 (10-52)||(40918731-40918773)
chr8 (10-52)||(43275399-43275441)
chr8 (10-52)||(37345806-37345848)
chr8 (10-52)||(2539930-2539972)
chr8 (10-52)||(3585686-3585728)
chr8 (10-52)||(11174223-11174265)
chr8 (71-119)||(14141651-14141699)
chr8 (71-119)||(14145088-14145136)
chr8 (14-56)||(3585447-3585489)
chr8 (10-52)||(27035230-27035272)
chr8 (13-57)||(28568156-28568200)
chr8 (13-57)||(28575749-28575793)
[»] chr5 (11 HSPs)
chr5 (10-55)||(40886607-40886652)
chr5 (10-52)||(12806853-12806895)
chr5 (10-52)||(30720492-30720534)
chr5 (10-52)||(36561099-36561141)
chr5 (10-54)||(25683227-25683271)
chr5 (11-52)||(25773885-25773926)
chr5 (10-52)||(10285058-10285100)
chr5 (10-52)||(23097724-23097766)
chr5 (10-53)||(734338-734381)
chr5 (10-45)||(11319791-11319826)
chr5 (14-55)||(12807092-12807133)
[»] chr3 (16 HSPs)
chr3 (10-55)||(46694107-46694152)
chr3 (10-52)||(13365078-13365120)
chr3 (10-52)||(19241668-19241710)
chr3 (10-52)||(29375367-29375409)
chr3 (10-52)||(36881515-36881557)
chr3 (10-52)||(32834989-32835031)
chr3 (14-59)||(38805238-38805283)
chr3 (10-53)||(18355867-18355910)
chr3 (10-52)||(199090-199132)
chr3 (10-52)||(3383311-3383353)
chr3 (14-52)||(19912177-19912215)
chr3 (10-52)||(23087931-23087973)
chr3 (14-52)||(38806344-38806382)
chr3 (10-52)||(48820575-48820617)
chr3 (14-54)||(12095426-12095466)
chr3 (20-52)||(37293437-37293469)
[»] chr6 (13 HSPs)
chr6 (10-54)||(29260427-29260471)
chr6 (10-52)||(1605813-1605855)
chr6 (10-52)||(7761535-7761577)
chr6 (10-52)||(8626717-8626759)
chr6 (10-52)||(4129661-4129703)
chr6 (10-52)||(13757442-13757484)
chr6 (10-52)||(15064695-15064737)
chr6 (10-52)||(17942678-17942720)
chr6 (10-52)||(31559738-31559780)
chr6 (10-45)||(8235860-8235895)
chr6 (14-52)||(15064933-15064971)
chr6 (14-52)||(19996322-19996360)
chr6 (80-126)||(24322727-24322773)
[»] scaffold0054 (1 HSPs)
scaffold0054 (10-52)||(45688-45730)
[»] chr7 (7 HSPs)
chr7 (10-52)||(27814046-27814088)
chr7 (10-52)||(40349196-40349238)
chr7 (10-52)||(25614353-25614395)
chr7 (10-52)||(36453124-36453166)
chr7 (10-52)||(10981743-10981785)
chr7 (10-52)||(47110685-47110727)
chr7 (26-55)||(39452108-39452137)
[»] chr4 (15 HSPs)
chr4 (10-52)||(12071795-12071837)
chr4 (10-52)||(14261279-14261321)
chr4 (10-52)||(21310656-21310698)
chr4 (10-52)||(24706247-24706289)
chr4 (10-52)||(25704886-25704928)
chr4 (10-52)||(44569072-44569114)
chr4 (10-50)||(21661537-21661577)
chr4 (10-50)||(21670301-21670341)
chr4 (10-52)||(22321268-22321310)
chr4 (10-52)||(40122487-40122529)
chr4 (10-51)||(21064996-21065037)
chr4 (10-52)||(20249014-20249056)
chr4 (10-42)||(50768097-50768129)
chr4 (17-52)||(39295418-39295453)
chr4 (16-52)||(34324618-34324654)
[»] scaffold1770 (1 HSPs)
scaffold1770 (10-52)||(396-438)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 71 - 311
Target Start/End: Complemental strand, 11836398 - 11836163
Alignment:
Q  71 acaaagatgtaaaggggattcaaagaatcctaatcactgctaaaactttaaatcaactcaacctatttacttttaaacgcaatcgaacaactcttgaaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||        ||||||||||||||||||||||    
T  11836398 acaaagatgtaaaggggattcaaagaatcctaatcactgctaaaactttaaatcaactcaatctatttac--------gcaatcgaacaactcttgaaaa 11836307  T
Q  171 ttgcaccaatttattatttttcattataagtgaagtaa---attgctaagtcgaaaacaacaattcttatagaaatgacacacttacttctatactactt 267  Q
    || |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11836306 tttcaccaatttattatttttcattataagtgaagtaataaattgctaagtcgaaaacaacaattcttgtagaaatgacacacttacttctatactactt 11836207  T
Q  268 gaatggtttgatgtacttgtcaaatttatcattattgatctttc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11836206 gaatggtttgatgtacttgtcaaatttatcattattgatctttc 11836163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 23367024 - 23367072
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagtagtactt 58  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23367024 attattctctaaaatggacaagtattatgaaacggagggagtattactt 23367072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 22388180 - 22388138
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22388180 attattctctaaaatggacaagtattatgaaacggagggagta 22388138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 1646522 - 1646567
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagtagta 55  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  1646522 attattctctaaaatggacaggtattatgaaacggagggagtagta 1646567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 40756953 - 40756908
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagtagta 55  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  40756953 attattctccaaaatggacaagtattatgaaacggagggagtagta 40756908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 1102736 - 1102778
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  1102736 attattctctcaaatggacaagtattatgaaacggagggagta 1102778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 3519142 - 3519184
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  3519142 attattctctaaaatggacaagtattatgaaacggaggaagta 3519184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 12969782 - 12969740
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  12969782 attattctccaaaatggacaagtattatgaaacggagggagta 12969740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 39938405 - 39938447
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  39938405 attattctctaaaatggacaagtattataaaacggagggagta 39938447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 37673784 - 37673743
Alignment:
Q  11 ttattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  37673784 ttattctctaaaatggacaagtattatgaaacggaaggagta 37673743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 34224393 - 34224434
Alignment:
Q  14 ttctctaaaatggacaagtattatgaaacggagggagtagta 55  Q
    ||||| |||||||||| ||||| |||||||||||||||||||    
T  34224393 ttctccaaaatggacatgtattttgaaacggagggagtagta 34224434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 23045321 - 23045273
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagtagtactt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23045321 attattctctaaaatggacaagtattatgaaacggagggagtagtactt 23045273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 284568 - 284610
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  284568 attattctctaaaatggacaagtattatgaaacggagggagta 284610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 24771948 - 24771906
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24771948 attattctctaaaatggacaagtattatgaaacggagggagta 24771906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 40783699 - 40783657
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  40783699 attattctctaaaatggacaagtattatgaaacggagggagta 40783657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 321863 - 321903
Alignment:
Q  12 tattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  321863 tattctctaaaatggacaagtattatgaaacggagggagta 321903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 33082979 - 33083021
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  33082979 attattctttaaaatggacaagtattatgaaacggagggagta 33083021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 47037894 - 47037848
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagtagtac 56  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||    
T  47037894 attattctttaaaatagacaagtattatgaaacggagggagtagtac 47037848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 23526474 - 23526516
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  23526474 attattcttcaaaatggacaagtattatgaaacggagggagta 23526516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 3943766 - 3943804
Alignment:
Q  14 ttctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  3943766 ttctctaaaatggacatgtattttgaaacggagggagta 3943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 41959812 - 41959850
Alignment:
Q  14 ttctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  41959812 ttctctaaaatggacatgtattttgaaacggagggagta 41959850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 51064796 - 51064754
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||| |||||| || ||||||    
T  51064796 attattctctaaaatggacaagtattgtgaaacagacggagta 51064754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 51064995 - 51065033
Alignment:
Q  14 ttctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  51064995 ttctttaaaatggacaagtattgtgaaacggagggagta 51065033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 7147148 - 7147193
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagtagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7147148 attattctctaaaatggacaagtattatgaaacggagggagtagta 7147193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 40058345 - 40058300
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagtagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  40058345 attattctctaaaatggacaagtattatgaaacggagggagtagta 40058300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 11646367 - 11646325
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11646367 attattctctaaaatggacaagtattatgaaacggagggagta 11646325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 30999566 - 30999524
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30999566 attattctctaaaatggacaagtattatgaaacggagggagta 30999524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 36068315 - 36068357
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  36068315 attattctctaaaatggacaagtattatgaaacggagggagta 36068357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 40918773 - 40918731
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  40918773 attattctctaaaatggacaagtattatgaaacggagggagta 40918731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 43275441 - 43275399
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43275441 attattctctaaaatggacaagtattatgaaacggagggagta 43275399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 37345806 - 37345848
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  37345806 attattctctaaaatggacaagtattatgaaacggaaggagta 37345848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 2539972 - 2539930
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||| ||||||||||||||||||||||||||| ||||||    
T  2539972 attattctttaaaatggacaagtattatgaaacggaaggagta 2539930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 3585686 - 3585728
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||||||||| |||||||||||||||||||| ||||||    
T  3585686 attattctctaaaatagacaagtattatgaaacggatggagta 3585728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 11174265 - 11174223
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||| ||||||| ||||||||||||||||||||||||||    
T  11174265 attattctttaaaatgaacaagtattatgaaacggagggagta 11174223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 14141651 - 14141699
Alignment:
Q  71 acaaagatgtaaaggggattcaaagaatcctaatcactgctaaaacttt 119  Q
    ||||||| ||| |||||||||||||||||||||||  ||||||||||||    
T  14141651 acaaagaggtagaggggattcaaagaatcctaatccatgctaaaacttt 14141699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 14145088 - 14145136
Alignment:
Q  71 acaaagatgtaaaggggattcaaagaatcctaatcactgctaaaacttt 119  Q
    ||||||| ||| |||||||||||||||||||||||  ||||||||||||    
T  14145088 acaaagaggtagaggggattcaaagaatcctaatccatgctaaaacttt 14145136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 3585489 - 3585447
Alignment:
Q  14 ttctctaaaatggacaagtattatgaaacggagggagtagtac 56  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||    
T  3585489 ttctccaaaatggacatgtattttgaaacggagggagtagtac 3585447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 27035230 - 27035272
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||| |||||| ||||||||||||||||||||| ||||    
T  27035230 attattctccaaaatgaacaagtattatgaaacggaggcagta 27035272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 28568156 - 28568200
Alignment:
Q  13 attctctaaaatggacaagtattatgaaacggagggagtagtact 57  Q
    |||||| |||||||||||||||| ||||| |||||||||| ||||    
T  28568156 attctccaaaatggacaagtattgtgaaatggagggagtactact 28568200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 28575749 - 28575793
Alignment:
Q  13 attctctaaaatggacaagtattatgaaacggagggagtagtact 57  Q
    |||||| |||||||||||||||| ||||| |||||||||| ||||    
T  28575749 attctccaaaatggacaagtattgtgaaatggagggagtactact 28575793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 40886652 - 40886607
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagtagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  40886652 attattctctaaaatggacaagtattatgaaacggagggagtagta 40886607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 12806895 - 12806853
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  12806895 attattctctaaaatggacaagtattatgaaacggagggagta 12806853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 30720534 - 30720492
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30720534 attattctctaaaatggacaagtattatgaaacggagggagta 30720492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 36561141 - 36561099
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  36561141 attattctctaaaatggacaagtattatgaaacggagggagta 36561099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 25683271 - 25683227
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagtagt 54  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  25683271 attattctccaaaatggacaagtattatgaaacggagggagtagt 25683227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 25773885 - 25773926
Alignment:
Q  11 ttattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  25773885 ttattctctaaaatggacaagtattatgaaacggagagagta 25773926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 10285100 - 10285058
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  10285100 attattctttaaaatagacaagtattatgaaacggagggagta 10285058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 23097766 - 23097724
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  23097766 attattctccaaaatggacaagtattatgaaacggaaggagta 23097724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 734381 - 734338
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagtag 53  Q
    ||||||||| |||||||||||||||| |||||||| ||||||||    
T  734381 attattctccaaaatggacaagtattgtgaaacggtgggagtag 734338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 11319791 - 11319826
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacgga 45  Q
    ||||||||||||||| ||||||||||||||||||||    
T  11319791 attattctctaaaatagacaagtattatgaaacgga 11319826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 12807092 - 12807133
Alignment:
Q  14 ttctctaaaatggacaagtattatgaaacggagggagtagta 55  Q
    ||||| |||||||||| ||||| |||||||||||||||||||    
T  12807092 ttctccaaaatggacatgtattttgaaacggagggagtagta 12807133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 46694152 - 46694107
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagtagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  46694152 attattctctaaaatggacaagtattatgaaacggagggagtagta 46694107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 13365078 - 13365120
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13365078 attattctctaaaatggacaagtattatgaaacggagggagta 13365120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 19241710 - 19241668
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19241710 attattctctaaaatggacaagtattatgaaacggagggagta 19241668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 29375367 - 29375409
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29375367 attattctctaaaatggacaagtattatgaaacggagggagta 29375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 36881515 - 36881557
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  36881515 attattctctaaaatggacaagtattatgaaacggagggagta 36881557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 32835031 - 32834989
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  32835031 attattctctacaatggacaagtattatgaaacggagggagta 32834989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 38805283 - 38805238
Alignment:
Q  14 ttctctaaaatggacaagtattatgaaacggagggagtagtacttt 59  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||    
T  38805283 ttctctaaaatggacatgtattttaaaacggagggagtagtacttt 38805238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 18355910 - 18355867
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagtag 53  Q
    ||||||||  |||||||||||||||| |||||||||||||||||    
T  18355910 attattcttcaaaatggacaagtattgtgaaacggagggagtag 18355867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 199090 - 199132
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||| |||||||||||||| |||||||||| ||||||||||    
T  199090 attattttctaaaatggacaactattatgaaatggagggagta 199132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 3383311 - 3383353
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||| ||||| | ||||||    
T  3383311 attattctctaaaatggacaagtattataaaacgaaaggagta 3383353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 19912177 - 19912215
Alignment:
Q  14 ttctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  19912177 ttctctaaaatggacatgtattttgaaacggagggagta 19912215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 23087973 - 23087931
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||| |||||| |||||||||||||||||||||| ||||    
T  23087973 attattctttaaaatcgacaagtattatgaaacggaggaagta 23087931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 38806344 - 38806382
Alignment:
Q  14 ttctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  38806344 ttctctaaaatggacatgtattttgaaacggagggagta 38806382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 48820575 - 48820617
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||| | ||||||||||||||||||||||||||||| ||||    
T  48820575 attattttttaaaatggacaagtattatgaaacggaggaagta 48820617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 12095426 - 12095466
Alignment:
Q  14 ttctctaaaatggacaagtattatgaaacggagggagtagt 54  Q
    ||||||||||||||||  |||| ||||||||||||||||||    
T  12095426 ttctctaaaatggacatatattttgaaacggagggagtagt 12095466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 37293469 - 37293437
Alignment:
Q  20 aaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||| ||||||||||||||||    
T  37293469 aaaatggacaagtattgtgaaacggagggagta 37293437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 29260427 - 29260471
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagtagt 54  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29260427 attattctctaaaatggacaagtattatgaaacggagggagtagt 29260471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 1605813 - 1605855
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1605813 attattctctaaaatggacaagtattatgaaacggagggagta 1605855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 7761535 - 7761577
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7761535 attattctctaaaatggacaagtattatgaaacggagggagta 7761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 8626717 - 8626759
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8626717 attattctctaaaatggacaagtattatgaaacggagggagta 8626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 4129661 - 4129703
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  4129661 attattttctaaaatggacaagtattatgaaacggagggagta 4129703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 13757442 - 13757484
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  13757442 attattctctaaaatggacaagtattatgaaacggatggagta 13757484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 15064737 - 15064695
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  15064737 attattctccaaaatggacaagtattatgaaacggagggagta 15064695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 17942678 - 17942720
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  17942678 attattctccaaaatggacaagtattatgaaacggagggagta 17942720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 31559780 - 31559738
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  31559780 attattctctaaaatggagaagtattatgaaacggagggagta 31559738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 8235860 - 8235895
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacgga 45  Q
    ||||||||||||||| ||||||||||||||||||||    
T  8235860 attattctctaaaatagacaagtattatgaaacgga 8235895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 15064933 - 15064971
Alignment:
Q  14 ttctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  15064933 ttctctaaaatggacatgtattttgaaacggagggagta 15064971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 19996360 - 19996322
Alignment:
Q  14 ttctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  19996360 ttctctaaaatggacatgtattttgaaacggagggagta 19996322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 24322727 - 24322773
Alignment:
Q  80 taaaggggattcaaagaatcctaatcactgctaaaactttaaatcaa 126  Q
    ||||||||||||||||||| |||||||| ||||||||| | ||||||    
T  24322727 taaaggggattcaaagaatgctaatcaccgctaaaactctgaatcaa 24322773  T

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Target: scaffold0054 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 45688 - 45730
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45688 attattctctaaaatggacaagtattatgaaacggagggagta 45730  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 27814046 - 27814088
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27814046 attattctctaaaatggacaagtattatgaaacggagggagta 27814088  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 40349196 - 40349238
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  40349196 attattctctaaaatggacaagtattatgaaacggagggagta 40349238  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 25614395 - 25614353
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  25614395 attattctctaaaatggacaattattatgaaacggagggagta 25614353  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 36453166 - 36453124
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  36453166 attattctctaaaatggacaagtattatgaaacggagagagta 36453124  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 10981743 - 10981785
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||||||||||||||| |||||||||| ||||||||||    
T  10981743 attattctctaaaatggacaaatattatgaaatggagggagta 10981785  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 47110685 - 47110727
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||| | ||||||||||||||||||||||||    
T  47110685 attattctctaaaatgaataagtattatgaaacggagggagta 47110727  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 39452137 - 39452108
Alignment:
Q  26 gacaagtattatgaaacggagggagtagta 55  Q
    ||||||||||||||||||||||||||||||    
T  39452137 gacaagtattatgaaacggagggagtagta 39452108  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 12071795 - 12071837
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  12071795 attattctctaaaatggacaagtattatgaaacggagggagta 12071837  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 14261279 - 14261321
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  14261279 attattctctaaaatggacaagtattatgaaacggagggagta 14261321  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 21310656 - 21310698
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21310656 attattctctaaaatggacaagtattatgaaacggagggagta 21310698  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 24706289 - 24706247
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24706289 attattctctaaaatggacaagtattatgaaacggagggagta 24706247  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 25704886 - 25704928
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  25704886 attattctctaaaatggacaagtattatgaaacggagggagta 25704928  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 44569072 - 44569114
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  44569072 attattctctaaaatggacaagtattatgaaacggagggagta 44569114  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 21661577 - 21661537
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggag 50  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  21661577 attattctctaaaatggacaagtattatgaaacggagggag 21661537  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 21670341 - 21670301
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggag 50  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  21670341 attattctctaaaatggacaagtattatgaaacggagggag 21670301  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 22321310 - 22321268
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  22321310 attattctctaaaatagacaagtattatgaaacggagggagta 22321268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 40122529 - 40122487
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  40122529 attattctctaaaatggacaagtattatgaaacggagagagta 40122487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 21064996 - 21065037
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagt 51  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  21064996 attattctctaaaatgaacaagtattatgaaacggagggagt 21065037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 20249056 - 20249014
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||| ||||||||||||||||||||||||||| |||||    
T  20249056 attattctccaaaatggacaagtattatgaaacggagtgagta 20249014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 50768097 - 50768129
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaac 42  Q
    |||||||||||||||||||||||||||||||||    
T  50768097 attattctctaaaatggacaagtattatgaaac 50768129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 39295418 - 39295453
Alignment:
Q  17 tctaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||||||||||||||||||||||| ||||||    
T  39295418 tctaaaatggacaagtattatgaaacggaaggagta 39295453  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 34324654 - 34324618
Alignment:
Q  16 ctctaaaatggacaagtattatgaaacggagggagta 52  Q
    ||||||||||||||||||||||||||| || ||||||    
T  34324654 ctctaaaatggacaagtattatgaaacagatggagta 34324618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 396 - 438
Alignment:
Q  10 attattctctaaaatggacaagtattatgaaacggagggagta 52  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  396 attattttctaaaatggacaagtattatgaaacggagggagta 438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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