View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5061_low_16 (Length: 305)

Name: NF5061_low_16
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5061_low_16
NF5061_low_16
[»] chr2 (7 HSPs)
chr2 (25-200)||(11072821-11072996)
chr2 (25-117)||(4090447-4090539)
chr2 (25-110)||(38215988-38216069)
chr2 (25-101)||(4026900-4026975)
chr2 (25-74)||(887414-887462)
chr2 (56-108)||(2790137-2790190)
chr2 (68-108)||(13097883-13097924)
[»] chr1 (4 HSPs)
chr1 (23-110)||(391133-391221)
chr1 (25-110)||(4068080-4068165)
chr1 (25-110)||(18327489-18327574)
chr1 (80-108)||(38781211-38781239)
[»] chr7 (6 HSPs)
chr7 (25-108)||(40629453-40629535)
chr7 (28-108)||(18837189-18837269)
chr7 (25-108)||(38372525-38372608)
chr7 (28-110)||(29390589-29390671)
chr7 (25-110)||(34922896-34922981)
chr7 (25-109)||(30181516-30181600)
[»] chr5 (10 HSPs)
chr5 (25-110)||(42851987-42852072)
chr5 (25-108)||(24030182-24030265)
chr5 (23-112)||(1576594-1576682)
chr5 (23-112)||(1608133-1608221)
chr5 (25-98)||(22201972-22202045)
chr5 (23-110)||(2878710-2878797)
chr5 (25-103)||(17128250-17128328)
chr5 (31-112)||(29922095-29922175)
chr5 (84-112)||(10537132-10537160)
chr5 (25-96)||(29922225-29922296)
[»] chr4 (10 HSPs)
chr4 (25-108)||(23297405-23297488)
chr4 (23-110)||(43699517-43699604)
chr4 (29-108)||(29877606-29877685)
chr4 (45-112)||(38345876-38345944)
chr4 (25-107)||(35124355-35124437)
chr4 (27-108)||(42611905-42611987)
chr4 (26-106)||(8130457-8130537)
chr4 (68-109)||(12023073-12023114)
chr4 (25-78)||(12495682-12495734)
chr4 (25-112)||(3564183-3564270)
[»] chr3 (5 HSPs)
chr3 (43-112)||(23555447-23555517)
chr3 (25-108)||(22809229-22809313)
chr3 (43-109)||(2086744-2086811)
chr3 (54-112)||(4974274-4974333)
chr3 (25-108)||(29270328-29270411)
[»] chr6 (2 HSPs)
chr6 (40-108)||(25430813-25430882)
chr6 (23-108)||(3211035-3211120)
[»] chr8 (2 HSPs)
chr8 (26-112)||(13131393-13131479)
chr8 (25-107)||(32131408-32131490)
[»] scaffold0157 (1 HSPs)
scaffold0157 (25-78)||(24743-24795)
[»] scaffold0012 (1 HSPs)
scaffold0012 (43-118)||(178457-178533)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 11072996 - 11072821
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataactcaaaaataagccaatccaaacggactcttatagaagt 124  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11072996 ttgacaagcttatgaatgaatacaaaaaagcttatttgtttggataagctgtttagcataactaaaaaataagccaatccaaacggactcttatagaagt 11072897  T
Q  125 ttgtaacaacttaagagcatggaatcctttatcacataatcaatcactaatccaccaatttaactcaaacaaaagc 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11072896 atgtaacaacttaagagcatggaatcctttatcacataatcaatcactaatccaccaatttaactcaaacaaaagc 11072821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 4090539 - 4090447
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaacggactctta 117  Q
    |||||||| |||||||| ||||||  || | |||||| |||| ||||||||||| |||||| ||||||||||||||||| || |||| ||||||    
T  4090539 ttgacaagattatgaat-aatacatcaaagtttatttatttgcataagctgttttgcataagctcaaaaataagccaattcagacgggctctta 4090447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 38216069 - 38215988
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaacgg 110  Q
    ||||||||||||||||| |||||| ||    |||||| |||| ||||||||||| |||||| |||||||||||| ||||||||||||    
T  38216069 ttgacaagcttatgaat-aatacataa----ttatttatttgcataagctgttttgcataagctcaaaaataagtcaatccaaacgg 38215988  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 4026975 - 4026900
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaa 101  Q
    |||||||||||||||   |||||| ||| |||||||| |||| |||||| |||| |||||| ||||||||||||||||    
T  4026975 ttgacaagcttatgat--aatacataaaagcttatttatttgcataagcagttttgcataagctcaaaaataagccaa 4026900  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 887462 - 887414
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagct 74  Q
    ||||||||||||||||| |||||||||| |||||||| |||| |||||||    
T  887462 ttgacaagcttatgaat-aatacaaaaaagcttatttatttgcataagct 887414  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 2790137 - 2790190
Alignment:
Q  56 ttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaac 108  Q
    |||||| |||| ||||||||||| |||||| |||||||||||||||| ||||||    
T  2790137 ttatttatttgcataagctgttttgcataagctcaaaaataagccaacccaaac 2790190  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 13097924 - 13097883
Alignment:
Q  68 ataagctgtttagcataa-ctcaaaaataagccaatccaaac 108  Q
    ||||||||||| |||||| |||||||||||||||||||||||    
T  13097924 ataagctgttttgcataagctcaaaaataagccaatccaaac 13097883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 391221 - 391133
Alignment:
Q  23 cattgacaagcttatgaatga-atacaaaaacgcttatttgtttggataagctgtttagcataac-tcaaaaataagccaatccaaacgg 110  Q
    ||||||||||||||||||| | ||| ||||| |||||||| |||| ||||||||||| ||||||| ||||||||||||||||||||||||    
T  391221 cattgacaagcttatgaataatatataaaaa-gcttatttatttgcataagctgttttgcataacctcaaaaataagccaatccaaacgg 391133  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 4068165 - 4068080
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaacgg 110  Q
    ||||||||||||||||| |||||| ||| |||||||| |||| | ||||| ||| ||| || || ||||||||||||||||||||||    
T  4068165 ttgacaagcttatgaat-aatacataaaagcttatttatttgcacaagctattttgcaaaagctaaaaaataagccaatccaaacgg 4068080  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 18327574 - 18327489
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcat-aactcaaaaataagccaatccaaacgg 110  Q
    ||||||||||||||| | |||||| ||| |||||||| |||| ||||||||||| | || || || |||||||| ||||||||||||    
T  18327574 ttgacaagcttatgagt-aatacataaaagcttatttatttgcataagctgttttgaataaattccaaaataagtcaatccaaacgg 18327489  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 38781211 - 38781239
Alignment:
Q  80 gcataactcaaaaataagccaatccaaac 108  Q
    |||||||||||||||||||||||||||||    
T  38781211 gcataactcaaaaataagccaatccaaac 38781239  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 40629453 - 40629535
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaac 108  Q
    ||||||||||||||||| |||||| ||| | |||||| |||||||||||||||| |||||| |||||||||||||||||||||||    
T  40629453 ttgacaagcttatgaat-aatacataaa-gtttatttatttggataagctgttttgcataagctcaaaaataagccaatccaaac 40629535  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 18837269 - 18837189
Alignment:
Q  28 acaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaac 108  Q
    |||||||||||||| |||||| | | |||||||| |||| ||| ||||||| |||||| |||||||||||||||||||||||    
T  18837269 acaagcttatgaat-aatacacataagcttatttatttgcatatgctgttttgcataagctcaaaaataagccaatccaaac 18837189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 38372608 - 38372525
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaac 108  Q
    ||||||| ||||||||| |||||| ||  |||||||| |||| ||||||||||| |||||| |||||||||||| ||||||||||    
T  38372608 ttgacaaacttatgaat-aatacataagagcttatttatttgcataagctgttttgcataagctcaaaaataagtcaatccaaac 38372525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 29390589 - 29390671
Alignment:
Q  28 acaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaacgg 110  Q
    |||||||||||||| ||||||  || | |||||| |||| ||||| |||||  ||||| |||||||||||||||||||||||||    
T  29390589 acaagcttatgaat-aatacatcaaagattatttatttgcataagttgttttccataaactcaaaaataagccaatccaaacgg 29390671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 34922981 - 34922896
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaacgg 110  Q
    ||||||| ||||||||| |||||| ||| |||||||| |||| ||||| ||||| || | | || ||||||||||||||||||||||    
T  34922981 ttgacaaacttatgaat-aatacataaaagcttatttatttgcataagttgttttgcgttagctgaaaaataagccaatccaaacgg 34922896  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 30181600 - 30181516
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaacg 109  Q
    ||||||||||||||||| |||||| ||| |||| ||| ||||  |||| ||| | |||||| |||||||||||| |||||||||||    
T  30181600 ttgacaagcttatgaat-aatacataaaagcttctttatttgcctaagttgtattgcataagctcaaaaataagtcaatccaaacg 30181516  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 42852072 - 42851987
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaacgg 110  Q
    ||||||||||||||||| |||||| ||| |||||||| |||| ||||||||||| |||||| | ||||||||||||||||| |||||    
T  42852072 ttgacaagcttatgaat-aatacataaaagcttatttatttgaataagctgttttgcataagcccaaaaataagccaatccgaacgg 42851987  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 24030265 - 24030182
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaac 108  Q
    ||||||||||||||||| |||||| ||| |||||||| |||||||||||||||| | |||| || ||||||||| || |||||||    
T  24030265 ttgacaagcttatgaat-aatacataaaagcttatttatttggataagctgttttgtataagcttaaaaataagtcattccaaac 24030182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 1576682 - 1576594
Alignment:
Q  23 cattgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaacggac 112  Q
    ||||||||||||||||||  |||||| ||| | |||||| ||||  |||||||||| |||||| | ||| |||||||||||||||||||||    
T  1576682 cattgacaagcttatgaa--aatacataaaagtttatttatttgcttaagctgttttgcataagcccaagaataagccaatccaaacggac 1576594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 1608133 - 1608221
Alignment:
Q  23 cattgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaacggac 112  Q
    ||||||||||||||||||  |||||| ||| | |||||| ||||  |||||||||| |||||| | ||| |||||||||||||||||||||    
T  1608133 cattgacaagcttatgaa--aatacataaaagtttatttatttgcttaagctgttttgcataagcccaagaataagccaatccaaacggac 1608221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 22201972 - 22202045
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagc 98  Q
    ||||||||||||||||| |||||| ||| |||||||| |||  ||||||||||| |||||| |||||||||||||    
T  22201972 ttgacaagcttatgaat-aatacataaaagcttatttatttacataagctgttttgcataagctcaaaaataagc 22202045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 2878710 - 2878797
Alignment:
Q  23 cattgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagcc-aatccaaacgg 110  Q
    ||||||||| ||||||||| |||| | ||| |||||||| |||| |||||||||||||||||| ||| |||||||||| |||||||||||    
T  2878710 cattgacaaacttatgaat-aatagataaaagcttatttatttgcataagctgtttagcataagctc-aaaataagcctaatccaaacgg 2878797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 17128328 - 17128250
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatc 103  Q
    |||| ||| |||||||| |||||| ||| |||||||| |||| ||||||||||| |||||| |||||||||||| |||||    
T  17128328 ttgataagtttatgaat-aatacataaaagcttatttatttgcataagctgttttgcataagctcaaaaataagtcaatc 17128250  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 29922175 - 29922095
Alignment:
Q  31 agcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaacggac 112  Q
    ||||||||||| |||| ||||  |||||||| |||| ||||||| |||  ||||| |||||||||||||||||| ||||||||    
T  29922175 agcttatgaattaatataaaa--gcttatttatttgcataagctatttttcataaactcaaaaataagccaatcaaaacggac 29922095  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 112
Target Start/End: Complemental strand, 10537160 - 10537132
Alignment:
Q  84 aactcaaaaataagccaatccaaacggac 112  Q
    |||||||||||||||||||||||||||||    
T  10537160 aactcaaaaataagccaatccaaacggac 10537132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 29922225 - 29922296
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataa 96  Q
    ||||||||||||||||| |||||| |||  ||||||| |||| |||| |||||| |||||| |||||||||||    
T  29922225 ttgacaagcttatgaat-aatacataaaaacttatttatttgcataaactgttttgcataagctcaaaaataa 29922296  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 23297488 - 23297405
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaac 108  Q
    ||||||| ||||||||| |||||| ||| |||||||| |||| ||||||| ||| |||||| |||||||||||||||||||||||    
T  23297488 ttgacaaacttatgaat-aatacataaaagcttatttatttgcataagctattttgcataagctcaaaaataagccaatccaaac 23297405  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 43699517 - 43699604
Alignment:
Q  23 cattgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaacgg 110  Q
    ||||||||||||||||||| || ||| ||| |||||||| |||| ||||| |||||  ||||| |||||||||||||||||||||||||    
T  43699517 cattgacaagcttatgaat-aagacataaaagcttatttatttgtataagttgtttttcataagctcaaaaataagccaatccaaacgg 43699604  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 29877685 - 29877606
Alignment:
Q  29 caagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaac 108  Q
    ||||||||||||| |||||| ||| |||||||| |||| ||||  ||||| |||||| |||||||||||||||||||||||    
T  29877685 caagcttatgaat-aatacataaaagcttatttatttgcataaattgttttgcataagctcaaaaataagccaatccaaac 29877606  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 38345876 - 38345944
Alignment:
Q  45 tacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaacggac 112  Q
    |||| ||| |||||||| |||||||||||||||| |||||| |||||| ||||| ||||||||||||||    
T  38345876 tacataaaagcttatttatttggataagctgttttgcataagctcaaacataagtcaatccaaacggac 38345944  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 35124437 - 35124355
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaa 107  Q
    ||||||||||||||||| | |||| ||| | |||| | |||| ||||||||||| |||||| |||||||||||| |||||||||    
T  35124437 ttgacaagcttatgaat-agtacataaaaggttatatatttgcataagctgttttgcataagctcaaaaataagtcaatccaaa 35124355  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 42611905 - 42611987
Alignment:
Q  27 gacaagcttatgaatgaatacaaa-aacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaac 108  Q
    ||||||||||||||| |||||| | || |||||||| |||| ||||| ||||| |||||| || ||||||||||||||||||||    
T  42611905 gacaagcttatgaat-aatacatataaagcttatttatttgcataagttgttttgcataagctaaaaaataagccaatccaaac 42611987  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 8130537 - 8130457
Alignment:
Q  26 tgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcata-actcaaaaataagccaatccaa 106  Q
    |||||| ||||||||| ||| || ||| |||||||| |||| ||||||||||| |||||  || ||||||||||||||||||    
T  8130537 tgacaaacttatgaat-aatgcataaaagcttatttatttgcataagctgttttgcatatgctaaaaaataagccaatccaa 8130457  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 12023114 - 12023073
Alignment:
Q  68 ataagctgtttagcataactcaaaaataagccaatccaaacg 109  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||    
T  12023114 ataaggtgttttgcataactctaaaataagccaatccaaacg 12023073  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 12495682 - 12495734
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgttt 78  Q
    ||||||||||||||||| |||||| ||| |||||||| |||| |||||||||||    
T  12495682 ttgacaagcttatgaat-aatacataaaagcttatttatttgcataagctgttt 12495734  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 3564270 - 3564183
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaacggac 112  Q
    ||||||| ||||||||| |||| | ||| | |||||| |||  ||||||||||| |||||| |||||||| ||| ||||||||||||||    
T  3564270 ttgacaaacttatgaat-aatatataaaagtttatttattttcataagctgttttgcataagctcaaaaacaagtcaatccaaacggac 3564183  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 23555517 - 23555447
Alignment:
Q  43 aatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaacggac 112  Q
    |||||| ||| |||||||| |||| |||| |||||| | |||| |||||||||||||||||||||||||||    
T  23555517 aatacataaaagcttatttatttgcataaactgtttcgtataagctcaaaaataagccaatccaaacggac 23555447  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 22809229 - 22809313
Alignment:
Q  25 ttgacaagcttatgaatga-atacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaac 108  Q
    ||||||||||||||||| | ||| ||||| |||||||| |||| ||||||||||| |||||| |||||||||||| |||| |||||    
T  22809229 ttgacaagcttatgaataatatataaaaa-gcttatttatttgcataagctgttttgcataacctcaaaaataagtcaattcaaac 22809313  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 2086744 - 2086811
Alignment:
Q  43 aatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaacg 109  Q
    |||||| ||| | |||||| |||  |||||||||||||||||| ||| ||||||||||||||||||||    
T  2086744 aatacataaaagtttatttatttacataagctgtttagcataagctctaaaataagccaatccaaacg 2086811  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 4974333 - 4974274
Alignment:
Q  54 gcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaacggac 112  Q
    |||||||| |||| |||||||| || |||||| ||| |||||||||||||||||||||||    
T  4974333 gcttatttatttgcataagctgctttgcataagctctaaaataagccaatccaaacggac 4974274  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 29270411 - 29270328
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaac 108  Q
    |||| |||||||||||| |||||| ||| |||||||| ||   ||||| ||||| |||||| |||||||||||| ||||||||||    
T  29270411 ttgaaaagcttatgaat-aatacataaaagcttatttattcctataagttgttttgcataagctcaaaaataagtcaatccaaac 29270328  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 25430813 - 25430882
Alignment:
Q  40 atgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaac 108  Q
    ||||||||| ||| |||||||| |||| |||||||||||  ||||| |||||||||||| ||||||||||    
T  25430813 atgaatacataaatgcttatttatttgtataagctgttttacataagctcaaaaataagtcaatccaaac 25430882  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 3211035 - 3211120
Alignment:
Q  23 cattgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaac 108  Q
    ||||||||||||||| | | |||||| ||| |||||||| |||| ||||||||||| ||| || || ||||||||||| ||||||||    
T  3211035 cattgacaagcttatcagt-aatacataaaagcttatttatttgcataagctgttttgcacaagctaaaaaataagccgatccaaac 3211120  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 13131479 - 13131393
Alignment:
Q  26 tgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaacggac 112  Q
    |||||| ||||||||| |||||| ||| |||||||| |||| ||||  ||||| |||||| || |||||||||| |||||||||||||    
T  13131479 tgacaaacttatgaat-aatacataaaagcttatttatttgcataatttgttttgcataagctaaaaaataagcaaatccaaacggac 13131393  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 32131490 - 32131408
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgtttagcataa-ctcaaaaataagccaatccaaa 107  Q
    ||||||| |||| |||| ||| || ||| |||||||| |||| ||||||||||| |||||| |||||||||||| |||||||||    
T  32131490 ttgacaaacttaggaat-aatgcataaaagcttatttatttgcataagctgttttgcataagctcaaaaataagtcaatccaaa 32131408  T

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Target: scaffold0157 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 24795 - 24743
Alignment:
Q  25 ttgacaagcttatgaatgaatacaaaaacgcttatttgtttggataagctgttt 78  Q
    ||||||||||||||||| |||||| ||| |||||||| |||| |||||||||||    
T  24795 ttgacaagcttatgaat-aatacataaaagcttatttatttgcataagctgttt 24743  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 178533 - 178457
Alignment:
Q  43 aatacaaaaacgcttatttgtttggataagctgtttagcataact-caaaaataagccaatccaaacggactcttat 118  Q
    |||||| ||| |||||||| |||| ||||| ||||||| |||| | ||||||||||  ||||||||||||| |||||    
T  178533 aatacataaaagcttatttatttgcataagttgtttagtataagttcaaaaataagttaatccaaacggacccttat 178457  T

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