View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5061_low_2 (Length: 441)
Name: NF5061_low_2
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5061_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 422
Target Start/End: Complemental strand, 18342583 - 18342180
Alignment:
| Q |
14 |
gaacatcgttagacattaagtttaagattcccaagggaagtgaaatatcttgagtagttgtatttgattgggttcttgctaaaaaagacttggcagacta |
113 |
Q |
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| T |
18342583 |
gaacattgttagatattaagtttaagattctcaagggaagtgaaatatcttgagta-----attcgattgggttcttgctagaaaagacttggtagacta |
18342489 |
T |
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| Q |
114 |
tgtcgtttacggtctgcctctcttacctgggaagtcaaccatactcttcattgtattttactaggtataagtaaggtttatgtgaggaaagaatgattaa |
213 |
Q |
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| T |
18342488 |
tgtcgtttacggtctgcctctcttacctggaaaatcaaccatactcttcattgtattttactaggtataagtaagctttatgtgaggaaagaatgattaa |
18342389 |
T |
|
| Q |
214 |
gatactttgatgttatttgtggtaactggcactcaaactaggtgacatggtttgattgagaatacatatagatttgcattgaggaatgtgtaagtccact |
313 |
Q |
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| T |
18342388 |
gatactttgatgttattcgtggtaactggcactcaaattaggtgacatggtttgattgagagtacatatagatttgcattgaggaatgtgtaagtccact |
18342289 |
T |
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| Q |
314 |
gtcgtgtgtatgagcgcacgagattgatcagctgcctgaatcctggcaaggattattattgcgcgcttggttagactacggtcgggaccggaagagcttg |
413 |
Q |
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| T |
18342288 |
gtcgtgtgtatgagcgcaccagattgatcagctgcctgaattctggcaaggattattattgcgcgcttgtttagactacggtcgggaccggaagagcttg |
18342189 |
T |
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| Q |
414 |
gttagacta |
422 |
Q |
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| T |
18342188 |
gttagacta |
18342180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 423
Target Start/End: Complemental strand, 18342193 - 18342148
Alignment:
| Q |
378 |
gcttggttagactacggtcgggaccggaagagcttggttagactat |
423 |
Q |
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| T |
18342193 |
gcttggttagactacggtcgggacaggaagagcttggttagactat |
18342148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 8e-65; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 16342112 - 16341872
Alignment:
| Q |
18 |
atcgttagacattaagtttaagattcccaagggaagtgaaatatcttgagtagttgtatttgattgggttcttgctaaaaaagacttggcagactatgtc |
117 |
Q |
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| T |
16342112 |
atcgttagatattaagtttatgatccccaaagaaagtggaataccttgagtagttgtattcggttgggttctggcaaggaaagacttggtggactatgtc |
16342013 |
T |
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| Q |
118 |
gtttacggtctgcctctcttacctgggaagtcaaccat--actcttcattgtattttactaggtataagtaaggtttatgtgaggaaagaatgattaaga |
215 |
Q |
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| T |
16342012 |
gtttacggtctgcctctcttacctgggaagtcaaccatacactattcattctattttactgggtaaaaataaggtttatgtgaggaaagaatgattaaga |
16341913 |
T |
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| Q |
216 |
tactttgatgttatttgtggtaactggcactcaaactaggt |
256 |
Q |
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| T |
16341912 |
tactttgaggttatagatggtaaccgacactcaaactaggt |
16341872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 424
Target Start/End: Complemental strand, 16341740 - 16341660
Alignment:
| Q |
345 |
ctgcctgaatcctggcaaggattattattgcgcgcttggttagactacggtc-gggaccggaagagcttggttagactatg |
424 |
Q |
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| T |
16341740 |
ctgccggaatcctgatgaggattattattgcgcgcttggttagactatagtcggggaccagaagagcttggttagactatg |
16341660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 16341793 - 16341738
Alignment:
| Q |
259 |
catggtttgattgagaatacatatagatttgcattgaggaatgtgtaagtccactg |
314 |
Q |
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| T |
16341793 |
catggtttgattgagagcgcatatagatttgcattgaggaatgtgtaagtccactg |
16341738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 423
Target Start/End: Complemental strand, 16341675 - 16341630
Alignment:
| Q |
378 |
gcttggttagactacggtcgggaccggaagagcttggttagactat |
423 |
Q |
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| T |
16341675 |
gcttggttagactatggtcgggaccggaagagcttggttagactat |
16341630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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