View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5061_low_21 (Length: 242)
Name: NF5061_low_21
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5061_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 34933421 - 34933640
Alignment:
| Q |
1 |
tatatgataatcaacttgagttttgacaaaataaagaagaagaatgaaaatacatagataccttgcgaatgaagcaacgattatgaaaatatgattgaaa |
100 |
Q |
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| T |
34933421 |
tatatgataatcaacttgagttttgacaaaataaagaagaagaatgaaaatacatagataccttgcgagtgaagcaacgattatgaaaatatgattgaaa |
34933520 |
T |
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| Q |
101 |
gagatacaaacgaaaactgtcatgcaatgcaaccctagagagacaaattcaacaaattcttctcattctacttataagaagcttcaacccaagagattac |
200 |
Q |
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| T |
34933521 |
gagatacaaacgaaaactgtcatgcaatgcaaccctagagag---------acaaattcttctcattctacttataagaagcttcaaccctagagattac |
34933611 |
T |
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| Q |
201 |
gaacgaaaactgtcatgcaatgaaaatac |
229 |
Q |
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| T |
34933612 |
gaacgaaaactatcatgcaatgaaaatac |
34933640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 34926958 - 34927131
Alignment:
| Q |
52 |
acatagataccttgcgaatgaagcaacgattatgaaaatatgattgaaagagatacaaacgaaaactgtcatgcaatgcaaccctagagagacaaattca |
151 |
Q |
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|||||||||||||| || ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34926958 |
acatagataccttgagagtgaagcaacgaatatgaaaataagattgaaagagataagaacgaaaactgtcatgcaatgcaaccctagagagacaagttca |
34927057 |
T |
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| Q |
152 |
acaaattcttctcattctacttataagaagcttcaacccaagagattacgaacgaaaactgtcatgcaatgaaa |
225 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
34927058 |
acaaattcttctcattctacgtataagaagcttcaaccctagagattacgaaaaaaaactgtcatgcaatgaaa |
34927131 |
T |
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