View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5061_low_7 (Length: 404)
Name: NF5061_low_7
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5061_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 6e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 47199120 - 47198939
Alignment:
| Q |
11 |
ggaggagcacagattcaagaagtttttgtagctcaatgaaaatacctctcctaaaagttacaaaagtggatctcaaatgaagaattccaaatgaaatatt |
110 |
Q |
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| T |
47199120 |
ggaggaacactgattcaagaagtttttgtagctcaatgaaaatacctctcctaaaagttacaaaagtggatctcaaatgaagaattccaaatgaaatatt |
47199021 |
T |
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| Q |
111 |
tcatttataataattgaagaagtacaatcactgaatgtaatgaaaataattatgagcgtaaaagataaatgcttaaactaaa |
192 |
Q |
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| T |
47199020 |
tcatttataataatggaagaagtacaataactgaatgtaatgaaaataattatgagcgtaaaagataaatggttaagctaaa |
47198939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 222 - 386
Target Start/End: Complemental strand, 47198946 - 47198779
Alignment:
| Q |
222 |
aagctaaatggcaaggatctattataatccactaaagatccttttctaatttaaa-gattgcaaagtaatacttct---aactcacttatttcaatgtaa |
317 |
Q |
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| T |
47198946 |
aagctaaatggcaaggatctattataatctactaaagatccttttctaatttaaaagattgcaa-gtaatacttcttctaactcacttatttcaatgtaa |
47198848 |
T |
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| Q |
318 |
ctttaaattcaatgcataaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttca |
386 |
Q |
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| T |
47198847 |
ctttaaattcaatgcataaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttca |
47198779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 47186309 - 47186240
Alignment:
| Q |
317 |
actttaaattcaatgcataaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttca |
386 |
Q |
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| T |
47186309 |
actttaaattcaatgcataaacctcttccagaaccaatgttgtttccatactttctcagccatatcttca |
47186240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 386
Target Start/End: Original strand, 748369 - 748423
Alignment:
| Q |
332 |
cataaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttca |
386 |
Q |
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| T |
748369 |
cataaacctcttccagaaccaatgttgtttccatactctctcggtcatttcttca |
748423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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