View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5061_low_8 (Length: 401)
Name: NF5061_low_8
Description: NF5061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5061_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 20 - 383
Target Start/End: Complemental strand, 45082574 - 45082211
Alignment:
| Q |
20 |
acagaatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082574 |
acagaatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgt |
45082475 |
T |
|
| Q |
120 |
tttggatgacaggttcttatggagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082474 |
tttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaa |
45082375 |
T |
|
| Q |
220 |
gaatgtgactattgcaggcaaacttgaaggaatttcgaacgacccttttactggaatatgtgtttctaatgtgactattgaaatgagtgcacataagaag |
319 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082374 |
gaatgtgactattgcgggcaaagttgaaggaatttctaacgacccttttactggaatatgtgtttctaatgtgactattgaaatgagtgcacataagaag |
45082275 |
T |
|
| Q |
320 |
aaacttccatggaattgtactgatgtttctggagttacaagtaatgtggttcctaaaccatgtg |
383 |
Q |
| |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45082274 |
aaacttccatggaattgcactgatatttctggagttacaagtaatgtggttcctaaaccatgtg |
45082211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 45078279 - 45077915
Alignment:
| Q |
19 |
cacagaatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtg |
118 |
Q |
| |
|
||||||||| ||| |||| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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|
| T |
45078279 |
cacagaatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatggatttgaatacaatgaaatatgtg |
45078180 |
T |
|
| Q |
119 |
ttttggatgacaggttcttatggagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgcta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45078179 |
ttttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgcta |
45078080 |
T |
|
| Q |
219 |
agaatgtgactattgcaggcaaacttgaaggaatttcgaacgacccttttactggaatatgtgtttctaatgtgactattgaaatgagtgcacataagaa |
318 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45078079 |
agaatgtgactattgcgggcaaacttgaaggaatttctaacgacccttttactggaatatgtgtttctaatgtgactattgaaatgagtgcacataagaa |
45077980 |
T |
|
| Q |
319 |
gaaacttccatggaattgtactgatgtttctggagttacaagtaatgtggttcctaaaccatgtg |
383 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45077979 |
gaaacttccatggaattgcactgatatttctggagttacaagtaatgtggttcctaaaccatgtg |
45077915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 367
Target Start/End: Complemental strand, 45075048 - 45074701
Alignment:
| Q |
20 |
acagaatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgt |
119 |
Q |
| |
|
|||||||| |||||||| |||||| | ||| |||||||||| || | |||||||||||||||||||||||||||| ||||| | ||| |||||||||| | |
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|
| T |
45075048 |
acagaatcggctgttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgttt |
45074949 |
T |
|
| Q |
120 |
tttggatgacaggttcttatggagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaa |
219 |
Q |
| |
|
||||||||||||| |||||| || |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| || || || |
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|
| T |
45074948 |
tttggatgacagggtcttataagtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtgaaataaattatagagatgttactgccaa |
45074849 |
T |
|
| Q |
220 |
gaatgtgactattgcaggcaaacttgaaggaatttcgaacgacccttttactggaatatgtgtttctaatgtgactattgaaatgagtgcacataagaag |
319 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
45074848 |
gaatgtgactattgcaggcaaacttgatggaatttctaatgacccttttactggaatttgtgtttctaatgcgactattgaaatgagtgcacataagaag |
45074749 |
T |
|
| Q |
320 |
aaacttccatggaattgtactgatgtttctggagttacaagtaatgtg |
367 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45074748 |
aaacttccatggaattgcactgatgtttctggagttacaagtaatgtg |
45074701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 45067489 - 45067125
Alignment:
| Q |
19 |
cacagaatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtg |
118 |
Q |
| |
|
|||||||||||||||||| |||||| | ||||| |||||||| || | ||||||||| || || |||||||||||| ||||||| ||| |||||||||| |
|
|
| T |
45067489 |
cacagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgtt |
45067390 |
T |
|
| Q |
119 |
ttttggatgacaggttcttatggagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgcta |
218 |
Q |
| |
|
|||||||||||||| ||||| || |||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||| | | |||| |
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|
| T |
45067389 |
ttttggatgacaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatattattgcta |
45067290 |
T |
|
| Q |
219 |
agaatgtgactattgcaggcaaacttgaaggaatttcgaacgacccttttactggaatatgtgtttctaatgtgactattgaaatgagtgcacataagaa |
318 |
Q |
| |
|
|||||||||| |||||||| ||||||| |||||||| || |||||||| || || ||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45067289 |
agaatgtgacaattgcaggacaacttgacggaatttctaatgaccctttcacagggatatgcatttctaatgtgactattgaaatgagtgcacagaagaa |
45067190 |
T |
|
| Q |
319 |
gaaacttccatggaattgtactgatgtttctggagttacaagtaatgtggttcctaaaccatgtg |
383 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
45067189 |
taatcttccatggaattgcactgatgtttctggagttgcaagtaatgcggttcctaaaccatgtg |
45067125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 20 - 383
Target Start/End: Complemental strand, 34504823 - 34504451
Alignment:
| Q |
20 |
acagaatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaataca---ttgaaatatg |
116 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||| | | ||||||||||||||||||||||||| || | ||||| ||| |||| ||||| |
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|
| T |
34504823 |
acagaatcagctgttagaatcaaatcagccgtcggtagaggcggatatgtgaaggacatttttgtcaaaggagtgaaattgaacacaatattgagatatg |
34504724 |
T |
|
| Q |
117 |
tgttttggatgacaggttcttatggagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgc |
216 |
Q |
| |
|
|||||||| ||||||| ||||||||||| || |||||||| |||||||||||||| |||||||||||||||| |||||| | || ||||||||| | || |
|
|
| T |
34504723 |
tgttttggttgacagggtcttatggagaccaccctgataatggatttgatccaaaagcattgcctaaaattactggaattatttttagagatgttattgc |
34504624 |
T |
|
| Q |
217 |
taagaatgtgactattgcaggcaaacttgaaggaatttcgaacgacccttttactggaatatgtgtttctaatgtgactattgaaatgagtgcac----- |
311 |
Q |
| |
|
|||||||||||| |||| || |||||||||||||||| || || |||||||| || |||||| |||||||||||||||||||| | || | | |
|
|
| T |
34504623 |
taagaatgtgaccgttgcggggcaacttgaaggaatttctaatgatccttttacagggatatgtatttctaatgtgactattgaattaagcgagcttaag |
34504524 |
T |
|
| Q |
312 |
-ataagaagaaacttccatggaattgtactgatgtttctggagttacaagtaatgtggttcctaaaccatgtg |
383 |
Q |
| |
|
| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34504523 |
aagaagaagaaacttccatggaattgcacagatgtttctggagttacaagtaatgtggttcctaaaccatgtg |
34504451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 17584522 - 17584404
Alignment:
| Q |
24 |
aatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgttttg |
123 |
Q |
| |
|
|||||||| |||| |||||| |||| || |||||||| || | |||||| | || ||||| | ||||||| | ||||| ||| |||||||||||||||| |
|
|
| T |
17584522 |
aatcagctattagaatcaaaactgcagttggtagaggagcatatgtgaaaggtatatttgttagaggaatgaaattgaaaacaatgaaatatgtgttttg |
17584423 |
T |
|
| Q |
124 |
gatgacaggttcttatgga |
142 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
17584422 |
gatgacaggttcatatgga |
17584404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 342 - 383
Target Start/End: Complemental strand, 12698128 - 12698087
Alignment:
| Q |
342 |
atgtttctggagttacaagtaatgtggttcctaaaccatgtg |
383 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12698128 |
atgtttctggagttacaagtaacgtggttcctaaaccatgtg |
12698087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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