View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5062-Insertion-1 (Length: 883)
Name: NF5062-Insertion-1
Description: NF5062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5062-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 664; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 7 - 745
Target Start/End: Complemental strand, 45801371 - 45800637
Alignment:
| Q |
7 |
agaactgtcatgttcctaaaggctccgatccacatgcaattgcgcagaatatcagttcagcacttgttcgtatgaactattgtggtcccgtttccatctc |
106 |
Q |
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| T |
45801371 |
agaactgtcatgttcctaaaggctccgatccacatgcaattgcgcagaatatcagttcagcacttgttcgtatgaactattgtggtcccgtttccatctc |
45801272 |
T |
|
| Q |
107 |
cgcctatggtgacaccactcgtatacctgcttctgtacagcacgcgctttcgagcaccggaatttcgcttaatcatgttcccgccggtaacgaactcact |
206 |
Q |
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| T |
45801271 |
cgcctatggtgacaccactcgtatacctgcttctgtacagcacgcgctttctagcaccggaatttcgcttaatcatgttcccgccggtaacgaactcact |
45801172 |
T |
|
| Q |
207 |
tcgattctgttgaattttggaattgtgatttcagttatgatttatgaactgtcggtttttgatttctgcgattgattcatttgttgattgatttatgctt |
306 |
Q |
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| T |
45801171 |
tcgattctgttgaattttggaattgtgatttcagttatgatttatgaactgtcggtttttgatttctgcgattgattcatttgttgattgatttatgctt |
45801072 |
T |
|
| Q |
307 |
gtatgagttcatttctgtgattgattactgaacttgttttgacgagaagcagcagcgtcgactgttattgaattaaaaagaattaaattctattgaatt- |
405 |
Q |
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| T |
45801071 |
gtatgagttcatttctgtgattgattactgaacttgttttgacgagaatcatcagcgtggactgttattgaattaaaaagaattaaattctgttgaattt |
45800972 |
T |
|
| Q |
406 |
ttttctcagtacaaggtgatttgatttgaagcatgattttaaattgtgattgtggtcgaggttgatgtggctattgtgataggagacattgtggctgttg |
505 |
Q |
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| T |
45800971 |
ttttctcagtacaaggtgatttgatttgaagcatgattttaaattgtgattgtggtcgaggttgatgtggctattgtgataggagacattgtggctgttg |
45800872 |
T |
|
| Q |
506 |
cgatatgtgttgcggtaattgtgtgggaatttaattctgcataaaatattatagccctgacttattgcggtttttgcgatgtgtattgctgtaatttcgc |
605 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45800871 |
cgatatgtgttgcggtaattgtgcgggaatttaattctgcataaaatattatagccctgacttattgcggtttttgcgatgtgtattgctgtaatttcgc |
45800772 |
T |
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| Q |
606 |
ggggattatatttatcacgtgatgcggcttgcaatctgtacggcctatatgggtattaaaaatctgatttgtgggaattatctaatatttgtttcacttg |
705 |
Q |
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| T |
45800771 |
-gggattatatttatcacgtgatgcggcttgcaatctgtacggcctatat-ggtattaaaaatctgatttgt-ggaattatctcatatttg-ttcacttg |
45800676 |
T |
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| Q |
706 |
tttgcttcctttctcgagggctttgaggtgtaacgtaaac |
745 |
Q |
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| T |
45800675 |
tttgcttcctttctcga-ggctttgaggtgtaacgtaaac |
45800637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 746 - 851
Target Start/End: Complemental strand, 45800676 - 45800570
Alignment:
| Q |
746 |
gtttgcttcctttctcgaggctttgaggtgtaacgcaaacaagtgaataaattttagataaacttggtacattttttgtgccgaa-cttgatagcatgag |
844 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45800676 |
gtttgcttcctttctcgaggctttgaggtgtaacgtaaacaagtgaacaaattttagataaacttggtacattttttgtgccgaagcttgatagcatgaa |
45800577 |
T |
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| Q |
845 |
attttga |
851 |
Q |
| |
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||||||| |
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| T |
45800576 |
attttga |
45800570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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