View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5062-Insertion-2 (Length: 716)
Name: NF5062-Insertion-2
Description: NF5062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5062-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 361 - 708
Target Start/End: Complemental strand, 31652466 - 31652120
Alignment:
| Q |
361 |
atcttgttattaactattacatgattattgtttttaggtgaatatcaccttgatcttatagtcggttatggcgcggtacccgtcatagttccacgtgttt |
460 |
Q |
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| T |
31652466 |
atcttgttattaactattacatgattattgtttttaggtgaatatcaccttgatcttatagtcggttatggcgcggtacccgtcatagttccacgtgttt |
31652367 |
T |
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| Q |
461 |
ccggggtccacatgctgttagatagctttgaaccaatccatggtgtgcttctatgtgaaggagaagacattgatccatcatggtacgagggagacacatc |
560 |
Q |
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| T |
31652366 |
ccggggtccacatgttgttagatagctttgaaccaatccatggtgtgcttctatgtgaaggagaagacattgatccatcatggtacgaggaagacacatc |
31652267 |
T |
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| Q |
561 |
atgtctttctcaagaggaattagaagaaataagaagactacatgtgagtgacacatccattgaccaagaaaaagattccattgaattagcactagccaaa |
660 |
Q |
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| T |
31652266 |
atgtctttctcaagaggaattagaagaaataagaagactacatgtgagtgacacatcaattgacaaagaaaaagattcaattgaattagcactagccaaa |
31652167 |
T |
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| Q |
661 |
cttttgtcttgaaagaaatattccttacttgggaatttgtagagggtc |
708 |
Q |
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| T |
31652166 |
c-tttgtcttgaaagaaatattccttacttgggaatttgtagagggtc |
31652120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 31652873 - 31652509
Alignment:
| Q |
8 |
cattccctatattaatgtgagctcacaaaacaatggatctcatctctaacgaatccctaatccttatccaaattttaatcctataaatatcat------- |
100 |
Q |
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| T |
31652873 |
cattccctatattaatgtgagctcacaaaacaatggatctcatctctaacgaatccctaatccttatccaaattttaatcctataaatatcatagagaag |
31652774 |
T |
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| Q |
101 |
----------tagaataacatacacaatacaatatcaaattttcttccacatttttattatacgaacatttcatcataacttggttttcctccataatca |
190 |
Q |
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| T |
31652773 |
atagtttcattagaataacatacacaatacaatatcaaattttgttccacatttttattatacgaacatttcttcataacttggttttcctccataatca |
31652674 |
T |
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| Q |
191 |
aattcaatcacgtacaatgtcttctgacctatctggcattctccctcgtgttctaatagtttctagacgaacccttcgcaagaacaagttcgttgatttt |
290 |
Q |
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| T |
31652673 |
aattcaatcacgtacaatgtcttctgacctatctggcattctccctcgtgttctaatagtttctagacgaacccttcgcaagaacaagttcgttgatttt |
31652574 |
T |
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| Q |
291 |
gttggtaagtttcatttctcatgtatttgtttaccatcttttatcaatcattcaatatgaatttt |
355 |
Q |
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| T |
31652573 |
gttggtaagtttcatttctcatgtatttgtttaccatcttttatcaatcattcaatatgaatttt |
31652509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 391 - 705
Target Start/End: Original strand, 218776 - 219095
Alignment:
| Q |
391 |
tttttaggtgaatatcaccttgatcttatagtcggttatggcgcggtacccgtcatagttccacgtgtttccggggtccacatgctgttagatagctttg |
490 |
Q |
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|||| ||||||||||||||||||||||||||| | |||| |||||||| || || || ||||||||||| || | |||||| ||||| | ||||||| |
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| T |
218776 |
ttttcaggtgaatatcaccttgatcttatagtagcaaatggtgcggtacctgtgattgtaccacgtgtttcaggtatacacatgttgttaaagagctttg |
218875 |
T |
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| Q |
491 |
aaccaatccatggtgtgcttctatgtgaaggagaagacattgatccatcatggtacgagggag---acacatcatg---tctttctcaagaggaattaga |
584 |
Q |
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| T |
218876 |
aaccaattcatggtgttcttctatgtgaaggagaagacatagatccttcatggtacgaacaagataacacaacatgtaatctttcacatgaagagttaga |
218975 |
T |
|
| Q |
585 |
agaaataagaagactacatgtgagtgacacatccattgaccaagaaaaagattccattgaattagcactagccaaacttttgtcttgaaagaaatattcc |
684 |
Q |
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| T |
218976 |
agaaatcaaaaagcttcattcaagtgacacaaacattgacaaagaaaaagattcaattgaattaatcttag-caaagctttgtcttgaaagaaacattcc |
219074 |
T |
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| Q |
685 |
ttacttgggaatttgtagagg |
705 |
Q |
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| T |
219075 |
ttacttaggaatttgtagagg |
219095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 218568 - 218647
Alignment:
| Q |
222 |
tctggcattctccctcgtgttctaatagtttctagacgaacccttcgcaagaacaagttcgttgattttgttggtaagtt |
301 |
Q |
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| T |
218568 |
tctgtcattcttcctcatgttctaatcgtttctagacgaacccttcgtaagaacaagttcgtcgatttcgtcggtaagtt |
218647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 478 - 536
Target Start/End: Original strand, 49630135 - 49630193
Alignment:
| Q |
478 |
ttagatagctttgaaccaatccatggtgtgcttctatgtgaaggagaagacattgatcc |
536 |
Q |
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| T |
49630135 |
ttagatagctttgagccaatccatggagttcttctttgtgaaggtgaggacattgatcc |
49630193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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