View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5062-Insertion-3 (Length: 548)

Name: NF5062-Insertion-3
Description: NF5062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5062-Insertion-3
NF5062-Insertion-3
[»] chr7 (15 HSPs)
chr7 (81-548)||(25683432-25683899)
chr7 (8-88)||(25683989-25684066)
chr7 (122-175)||(26308247-26308300)
chr7 (126-175)||(31251732-31251781)
chr7 (231-264)||(30279060-30279093)
chr7 (127-159)||(5758781-5758813)
chr7 (126-158)||(31726771-31726803)
chr7 (124-159)||(16698345-16698380)
chr7 (221-264)||(16698453-16698496)
chr7 (124-159)||(17672581-17672616)
chr7 (221-264)||(17672689-17672732)
chr7 (380-427)||(25956279-25956326)
chr7 (122-159)||(3756372-3756409)
chr7 (231-264)||(5038183-5038216)
chr7 (231-264)||(35851910-35851943)
[»] chr4 (12 HSPs)
chr4 (128-174)||(54023732-54023778)
chr4 (128-174)||(54023927-54023973)
chr4 (128-212)||(54026995-54027074)
chr4 (280-402)||(5609218-5609339)
chr4 (360-427)||(34835564-34835631)
chr4 (221-264)||(46823236-46823279)
chr4 (126-164)||(21552697-21552735)
chr4 (360-402)||(39343534-39343575)
chr4 (126-159)||(25844503-25844536)
chr4 (231-264)||(37709957-37709990)
chr4 (126-159)||(40422011-40422044)
chr4 (355-451)||(30738863-30738959)
[»] chr5 (3 HSPs)
chr5 (126-175)||(8462945-8462994)
chr5 (127-161)||(35446954-35446988)
chr5 (126-175)||(38433472-38433523)
[»] chr3 (8 HSPs)
chr3 (126-175)||(30670645-30670694)
chr3 (126-161)||(20844740-20844775)
chr3 (135-187)||(7729492-7729544)
chr3 (341-412)||(8958113-8958183)
chr3 (233-267)||(30670542-30670576)
chr3 (379-435)||(9345245-9345302)
chr3 (127-159)||(7201666-7201698)
chr3 (127-159)||(41361408-41361440)
[»] chr2 (7 HSPs)
chr2 (123-180)||(17296610-17296667)
chr2 (358-401)||(5608127-5608170)
chr2 (126-159)||(29191784-29191817)
chr2 (126-159)||(42117332-42117365)
chr2 (221-265)||(4091493-4091537)
chr2 (232-264)||(14442021-14442053)
chr2 (127-159)||(14994749-14994781)
[»] chr1 (7 HSPs)
chr1 (355-422)||(26608221-26608288)
chr1 (229-264)||(31847321-31847356)
chr1 (122-161)||(52193867-52193906)
chr1 (126-159)||(21281236-21281269)
chr1 (290-427)||(37047027-37047163)
chr1 (127-159)||(35938326-35938358)
chr1 (127-159)||(44061408-44061440)
[»] chr6 (6 HSPs)
chr6 (371-430)||(28028569-28028628)
chr6 (360-427)||(28672102-28672169)
chr6 (368-429)||(9583406-9583467)
chr6 (127-159)||(7271654-7271686)
chr6 (358-402)||(14212952-14212996)
chr6 (232-264)||(17145950-17145982)
[»] chr8 (3 HSPs)
chr8 (372-422)||(35588742-35588792)
chr8 (126-159)||(34273258-34273291)
chr8 (125-161)||(10177133-10177168)
[»] scaffold0110 (1 HSPs)
scaffold0110 (232-264)||(31311-31343)


Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 81 - 548
Target Start/End: Complemental strand, 25683899 - 25683432
Alignment:
Q  81 ttatttaacaagtggtcttttttattaatttgaaaatttggtaggaaattgctcttctcccttttgtttttgctcattcaccgatcttaaaagtgactac 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25683899 ttatttaacaagtggtcttttttattaatttgaaaatttggtaggaaattgctcttctcccttttgtttttgctcattcaccgatcttaaaagtgactac 25683800  T
Q  181 gtaagttgaattaactcacgctaaaaaatgtcaggctggccattttttaaggaatgagcaattttgaaagggagaagagcaattatcactcggtattggt 280  Q
    || |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  25683799 gtgagttgagttaactcacgctaaaaaatgtcaggctggccattttttaaggaatgggcaattttgaaagggagaagagcaattatcactcggtattgat 25683700  T
Q  281 ccaaggattgactaatctgaggggttcaatcctagtgtccacttgtgtgggcctcatttgaagctagagcacgactttatatggacttaacccatcaaaa 380  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25683699 ccaaagattgactaatctgaggggttcaatcctagtgtccacttgtgtgggcctcatttgaagctagagcacgactttatatggacttaatccatcaaaa 25683600  T
Q  381 ttgacaccagggagaatcgaacacaagaccttgagaggagcatactcaaaagtcttaaatcaacatcattagattaacccaagtggatgttttacaagtg 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||    
T  25683599 ttgacaccagggagaatcgaacacaagaccttgagaggagcatactcaaaagtcttaaattaacaccattagatcaacccaagtggatgttttacaagtg 25683500  T
Q  481 gttctcaaatgatttaggttgtatcttgaggtaacatgtggagtcttagggttgtttgggcgggtgtt 548  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25683499 gttctcaaatgctttaggttgtatcttgaggtaacatgtggagtcttagggttgtttggtcgggtgtt 25683432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 25684066 - 25683989
Alignment:
Q  8 ctgggtgtgttaaacccgccccgccccgttattgccatgtctatttatgggtgggaagatatgggctccatgtttatttaa 88  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25684066 ctgggtgtgttaaacccgccccgccccgtt---gccatgtctatttatgggtgggaggatatgggctccatgtttatttaa 25683989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 26308247 - 26308300
Alignment:
Q  122 taggaaattgctcttctcccttttgtttttgctcattcaccgatcttaaaagtg 175  Q
    |||||||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  26308247 taggaaattgctcttctttcttttgtttttgctcattcaccgaccttaaaagtg 26308300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 31251732 - 31251781
Alignment:
Q  126 aaattgctcttctcccttttgtttttgctcattcaccgatcttaaaagtg 175  Q
    |||||||||||| |||||||||||||||| ||||||| ||||||||||||    
T  31251732 aaattgctcttcacccttttgtttttgctaattcaccaatcttaaaagtg 31251781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 30279093 - 30279060
Alignment:
Q  231 ggaatgagcaattttgaaagggagaagagcaatt 264  Q
    ||||||||||||||||||||||||||||||||||    
T  30279093 ggaatgagcaattttgaaagggagaagagcaatt 30279060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 5758781 - 5758813
Alignment:
Q  127 aattgctcttctcccttttgtttttgctcattc 159  Q
    |||||||||||||||||||||||||||||||||    
T  5758781 aattgctcttctcccttttgtttttgctcattc 5758813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 31726803 - 31726771
Alignment:
Q  126 aaattgctcttctcccttttgtttttgctcatt 158  Q
    |||||||||||||||||||||||||||||||||    
T  31726803 aaattgctcttctcccttttgtttttgctcatt 31726771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 16698345 - 16698380
Alignment:
Q  124 ggaaattgctcttctcccttttgtttttgctcattc 159  Q
    |||||||||||||||||| |||||||||||||||||    
T  16698345 ggaaattgctcttctcccatttgtttttgctcattc 16698380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 16698453 - 16698496
Alignment:
Q  221 cattttttaaggaatgagcaattttgaaagggagaagagcaatt 264  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||    
T  16698453 catttttaagggaatgagcaattttaaaagggagaagagcaatt 16698496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 17672581 - 17672616
Alignment:
Q  124 ggaaattgctcttctcccttttgtttttgctcattc 159  Q
    |||||||||||||||||| |||||||||||||||||    
T  17672581 ggaaattgctcttctcccatttgtttttgctcattc 17672616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 17672689 - 17672732
Alignment:
Q  221 cattttttaaggaatgagcaattttgaaagggagaagagcaatt 264  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||    
T  17672689 catttttaagggaatgagcaattttaaaagggagaagagcaatt 17672732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 427
Target Start/End: Original strand, 25956279 - 25956326
Alignment:
Q  380 attgacaccagggagaatcgaacacaagaccttgagaggagcatactc 427  Q
    |||||||||||||||||| ||||  |||||||||||||||||| ||||    
T  25956279 attgacaccagggagaattgaacctaagaccttgagaggagcacactc 25956326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 3756372 - 3756409
Alignment:
Q  122 taggaaattgctcttctcccttttgtttttgctcattc 159  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  3756372 taggtaattgctcttctcccatttgtttttgctcattc 3756409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 5038183 - 5038216
Alignment:
Q  231 ggaatgagcaattttgaaagggagaagagcaatt 264  Q
    |||||||||||||||| |||||||||||||||||    
T  5038183 ggaatgagcaattttggaagggagaagagcaatt 5038216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 35851943 - 35851910
Alignment:
Q  231 ggaatgagcaattttgaaagggagaagagcaatt 264  Q
    |||||||||||||||||||| |||||||||||||    
T  35851943 ggaatgagcaattttgaaagagagaagagcaatt 35851910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 54023778 - 54023732
Alignment:
Q  128 attgctcttctcccttttgtttttgctcattcaccgatcttaaaagt 174  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  54023778 attgctcttctcccttttgtttttgctcattcaccgatattaaaagt 54023732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 54023973 - 54023927
Alignment:
Q  128 attgctcttctcccttttgtttttgctcattcaccgatcttaaaagt 174  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  54023973 attgctcttctcccttttatttttgctcattcaccgatcttaaaagt 54023927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 54027074 - 54026995
Alignment:
Q  128 attgctcttctcccttttgtttttgctcattcaccgatcttaaaagtgactacgtaagttgaattaactcacgctaaaaaatgtc 212  Q
    |||||| |||||||||||||||||| |||||| | ||| ||||||||| |||| ||     ||||||||||||||||||||||||    
T  54027074 attgcttttctcccttttgtttttgttcattcgctgattttaaaagtgtctacata-----aattaactcacgctaaaaaatgtc 54026995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 402
Target Start/End: Original strand, 5609218 - 5609339
Alignment:
Q  280 tccaaggattgactaatctgaggggttcaatcctagtgtccacttgtgtgggcctcatttgaagctagagcacgactttatatggacttaacccatcaaa 379  Q
    |||||| || |||||||| |||||| ||||||| |  ||||||||| | ||||| ||||| |||| |||||| | || | |||||||||| |||| | ||    
T  5609218 tccaagaatcgactaatccgaggggatcaatcccaccgtccacttgcgggggccccatttaaagccagagcaag-ctctgtatggacttagcccaccgaa 5609316  T
Q  380 attgacaccagggagaatcgaac 402  Q
    |||| |||||| |||||||||||    
T  5609317 attggcaccagagagaatcgaac 5609339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 427
Target Start/End: Complemental strand, 34835631 - 34835564
Alignment:
Q  360 tatggacttaacccatcaaaattgacaccagggagaatcgaacacaagaccttgagaggagcatactc 427  Q
    |||||||||| |||| | ||||||||||||| | ||||||||||  ||||||| ||||||||| ||||    
T  34835631 tatggacttagcccaccgaaattgacaccagagggaatcgaacatgagaccttaagaggagcaaactc 34835564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 46823279 - 46823236
Alignment:
Q  221 cattttttaaggaatgagcaattttgaaagggagaagagcaatt 264  Q
    ||||||||| |||||||| ||||||||| |||||||||||||||    
T  46823279 cattttttagggaatgaggaattttgaatgggagaagagcaatt 46823236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 21552697 - 21552735
Alignment:
Q  126 aaattgctcttctcccttttgtttttgctcattcaccga 164  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  21552697 aaattgctcttctcctttttgttttttctcattcaccga 21552735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 402
Target Start/End: Complemental strand, 39343575 - 39343534
Alignment:
Q  360 tatggacttaacccatcaaaattgacaccagggagaatcgaac 402  Q
    |||||||||| |||||||||||||||||||| |||||||||||    
T  39343575 tatggactta-cccatcaaaattgacaccagagagaatcgaac 39343534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 25844536 - 25844503
Alignment:
Q  126 aaattgctcttctcccttttgtttttgctcattc 159  Q
    ||||||||||||||||||| ||||||||||||||    
T  25844536 aaattgctcttctccctttagtttttgctcattc 25844503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 37709957 - 37709990
Alignment:
Q  231 ggaatgagcaattttgaaagggagaagagcaatt 264  Q
    ||||||||||||||| ||||||||||||||||||    
T  37709957 ggaatgagcaattttcaaagggagaagagcaatt 37709990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 40422044 - 40422011
Alignment:
Q  126 aaattgctcttctcccttttgtttttgctcattc 159  Q
    ||||||||||||||||||| ||||||||||||||    
T  40422044 aaattgctcttctccctttcgtttttgctcattc 40422011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 451
Target Start/End: Complemental strand, 30738959 - 30738863
Alignment:
Q  355 ctttatatggacttaacccatcaaaattgacaccagggagaatcgaacacaagaccttgagaggagcatactcaaaagtcttaaatcaacatcatta 451  Q
    |||| |||| |||||||||||||||||||||| |||    |||||||||| ||| ||| ||| ||||| |||  ||||||| ||| ||||| |||||    
T  30738959 ctttgtatgaacttaacccatcaaaattgacatcagaagaaatcgaacacgagatcttaagatgagcacactttaaagtctaaaaccaacaccatta 30738863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 8462945 - 8462994
Alignment:
Q  126 aaattgctcttctcccttttgtttttgctcattcaccgatcttaaaagtg 175  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  8462945 aaattgctcttctctcttttgtttttgctcattcaccgatcgtaaaagtg 8462994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 35446954 - 35446988
Alignment:
Q  127 aattgctcttctcccttttgtttttgctcattcac 161  Q
    ||||||||||||||| |||||||||||||||||||    
T  35446954 aattgctcttctcccatttgtttttgctcattcac 35446988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 38433523 - 38433472
Alignment:
Q  126 aaattgctcttctcccttttgtt--tttgctcattcaccgatcttaaaagtg 175  Q
    |||||||||||||||||||| ||  ||| |||||||| ||||||||||||||    
T  38433523 aaattgctcttctcccttttttttcttttctcattcatcgatcttaaaagtg 38433472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 30670694 - 30670645
Alignment:
Q  126 aaattgctcttctcccttttgtttttgctcattcaccgatcttaaaagtg 175  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||    
T  30670694 aaattgctcttctcccgtttgtttttgctcgttcaccgatctgaaaagtg 30670645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 126 - 161
Target Start/End: Original strand, 20844740 - 20844775
Alignment:
Q  126 aaattgctcttctcccttttgtttttgctcattcac 161  Q
    ||||||||||||||||||||||||||||||||||||    
T  20844740 aaattgctcttctcccttttgtttttgctcattcac 20844775  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 7729544 - 7729492
Alignment:
Q  135 ttctcccttttgtttttgctcattcaccgatcttaaaagtgactacgtaagtt 187  Q
    ||||||||||||||||||||||||||  ||||| ||||||| | |||||||||    
T  7729544 ttctcccttttgtttttgctcattcatggatctaaaaagtgtcaacgtaagtt 7729492  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 412
Target Start/End: Original strand, 8958113 - 8958183
Alignment:
Q  341 aagctagagcacgactttatatggacttaacccatcaaaattgacaccagggagaatcgaacacaagacctt 412  Q
    ||||||||||| | |||| |||||||||| |||| ||||||||||||||| |  ||||||||| ||||||||    
T  8958113 aagctagagcaag-ctttgtatggacttagcccaccaaaattgacaccagaggaaatcgaacataagacctt 8958183  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 267
Target Start/End: Complemental strand, 30670576 - 30670542
Alignment:
Q  233 aatgagcaattttgaaagggagaagagcaattatc 267  Q
    |||||||||||||| ||||||||||||||||||||    
T  30670576 aatgagcaattttgtaagggagaagagcaattatc 30670542  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 9345245 - 9345302
Alignment:
Q  379 aattgacaccagggagaatcgaacacaagaccttga-gaggagcatactcaaaagtct 435  Q
    ||||||||||||||||||||||||  |||||||| | |||||||| |||| |||||||    
T  9345245 aattgacaccagggagaatcgaacctaagacctttaggaggagcacactccaaagtct 9345302  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 7201666 - 7201698
Alignment:
Q  127 aattgctcttctcccttttgtttttgctcattc 159  Q
    |||||| ||||||||||||||||||||||||||    
T  7201666 aattgcccttctcccttttgtttttgctcattc 7201698  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 41361440 - 41361408
Alignment:
Q  127 aattgctcttctcccttttgtttttgctcattc 159  Q
    |||||||||||||||||||||||||| ||||||    
T  41361440 aattgctcttctcccttttgtttttgttcattc 41361408  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 17296610 - 17296667
Alignment:
Q  123 aggaaattgctcttctcccttttgtttttgctcattcaccgatcttaaaagtgactac 180  Q
    ||||||||| |||||||| ||||||||||||||||||||| || ||||||||| ||||    
T  17296610 aggaaattgttcttctcctttttgtttttgctcattcaccaatgttaaaagtgcctac 17296667  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 401
Target Start/End: Original strand, 5608127 - 5608170
Alignment:
Q  358 tatatggacttaacccatcaaaattgacaccagggagaatcgaa 401  Q
    |||||||||||| |||| ||||||||||||||| ||||||||||    
T  5608127 tatatggacttagcccaccaaaattgacaccagagagaatcgaa 5608170  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 29191784 - 29191817
Alignment:
Q  126 aaattgctcttctcccttttgtttttgctcattc 159  Q
    |||||||||||||||| |||||||||||||||||    
T  29191784 aaattgctcttctcccatttgtttttgctcattc 29191817  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 42117365 - 42117332
Alignment:
Q  126 aaattgctcttctcccttttgtttttgctcattc 159  Q
    ||||||||||||||||||||| ||||||||||||    
T  42117365 aaattgctcttctcccttttggttttgctcattc 42117332  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 4091493 - 4091537
Alignment:
Q  221 cattttttaaggaatgagcaattttgaaagggagaagagcaatta 265  Q
    ||||||| | ||||||| ||||||| |||||||||||||||||||    
T  4091493 catttttaagggaatgaacaattttaaaagggagaagagcaatta 4091537  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 14442053 - 14442021
Alignment:
Q  232 gaatgagcaattttgaaagggagaagagcaatt 264  Q
    ||||||| |||||||||||||||||||||||||    
T  14442053 gaatgagtaattttgaaagggagaagagcaatt 14442021  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 14994749 - 14994781
Alignment:
Q  127 aattgctcttctcccttttgtttttgctcattc 159  Q
    ||||||||||||||| |||||||||||||||||    
T  14994749 aattgctcttctcccatttgtttttgctcattc 14994781  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 26608288 - 26608221
Alignment:
Q  355 ctttatatggacttaacccatcaaaattgacaccagggagaatcgaacacaagaccttgagaggagca 422  Q
    |||||||||| |||||| |||  ||||||||| ||||||||||| ||||  |||||||||||||||||    
T  26608288 ctttatatgggcttaactcattgaaattgacatcagggagaatcaaacatgagaccttgagaggagca 26608221  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 31847356 - 31847321
Alignment:
Q  229 aaggaatgagcaattttgaaagggagaagagcaatt 264  Q
    ||||||||||||||||||||||||||||||||||||    
T  31847356 aaggaatgagcaattttgaaagggagaagagcaatt 31847321  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 52193906 - 52193867
Alignment:
Q  122 taggaaattgctcttctcccttttgtttttgctcattcac 161  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  52193906 taggaaattgctcttctcccttttgttttttcttattcac 52193867  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 21281236 - 21281269
Alignment:
Q  126 aaattgctcttctcccttttgtttttgctcattc 159  Q
    |||||||||||||||||||||||||| |||||||    
T  21281236 aaattgctcttctcccttttgtttttactcattc 21281269  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 427
Target Start/End: Complemental strand, 37047163 - 37047027
Alignment:
Q  290 gactaatctgaggggttcaatcctagtgtccacttgtgtgggcctcatttgaagctagagcacgactttatatggacttaacccatcaaaattgacacca 389  Q
    ||||||||  |||||| |||||| |  ||||||||||| ||||| ||||| |||||||||||   || | ||||||| || |||| |||||||   ||||    
T  37047163 gactaatcctaggggtccaatcccaccgtccacttgtgggggccccatttaaagctagagcaaagctctgtatggac-tagcccaccaaaatttgtacca 37047065  T
Q  390 gggagaatcgaacacaagaccttgagaggagcatactc 427  Q
    ||| ||||| |||   ||||||||||||||||| ||||    
T  37047064 gggggaatcaaacctgagaccttgagaggagcacactc 37047027  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 35938326 - 35938358
Alignment:
Q  127 aattgctcttctcccttttgtttttgctcattc 159  Q
    ||||||||||||||| |||||||||||||||||    
T  35938326 aattgctcttctcccatttgtttttgctcattc 35938358  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 44061440 - 44061408
Alignment:
Q  127 aattgctcttctcccttttgtttttgctcattc 159  Q
    ||||||||||||||| |||||||||||||||||    
T  44061440 aattgctcttctcccgtttgtttttgctcattc 44061408  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 430
Target Start/End: Complemental strand, 28028628 - 28028569
Alignment:
Q  371 cccatcaaaattgacaccagggagaatcgaacacaagaccttgagaggagcatactcaaa 430  Q
    |||||| |||||| || ||||||||||||||||  ||||||||||||||||  |||||||    
T  28028628 cccatcgaaattggcatcagggagaatcgaacatgagaccttgagaggagctcactcaaa 28028569  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 427
Target Start/End: Complemental strand, 28672169 - 28672102
Alignment:
Q  360 tatggacttaacccatcaaaattgacaccagggagaatcgaacacaagaccttgagaggagcatactc 427  Q
    |||||||||| |||| ||||||||||||||| | |||||||||  |||||||  ||||||||| ||||    
T  28672169 tatggacttagcccaccaaaattgacaccagagggaatcgaacctaagacctctagaggagcaaactc 28672102  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 429
Target Start/End: Complemental strand, 9583467 - 9583406
Alignment:
Q  368 taacccatcaaaattgacaccagggagaatcgaacacaagaccttgagaggagcatactcaa 429  Q
    ||||||| | |||||| |||||| |||||||||||   ||||||||||||||||| ||||||    
T  9583467 taacccaccgaaattggcaccagagagaatcgaactggagaccttgagaggagcacactcaa 9583406  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 7271654 - 7271686
Alignment:
Q  127 aattgctcttctcccttttgtttttgctcattc 159  Q
    ||||||||||||||| |||||||||||||||||    
T  7271654 aattgctcttctcccatttgtttttgctcattc 7271686  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 14212996 - 14212952
Alignment:
Q  358 tatatggacttaacccatcaaaattgacaccagggagaatcgaac 402  Q
    |||||||||||| ||||||||||||| |||||| | |||||||||    
T  14212996 tatatggacttagcccatcaaaattggcaccagagggaatcgaac 14212952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 17145982 - 17145950
Alignment:
Q  232 gaatgagcaattttgaaagggagaagagcaatt 264  Q
    |||||||||||||||||| ||||||||||||||    
T  17145982 gaatgagcaattttgaaatggagaagagcaatt 17145950  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 422
Target Start/End: Original strand, 35588742 - 35588792
Alignment:
Q  372 ccatcaaaattgacaccagggagaatcgaacacaagaccttgagaggagca 422  Q
    ||||||||||||||||||  |||| ||||||  ||||||||||||||||||    
T  35588742 ccatcaaaattgacaccacagagagtcgaacctaagaccttgagaggagca 35588792  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 34273291 - 34273258
Alignment:
Q  126 aaattgctcttctcccttttgtttttgctcattc 159  Q
    |||||||||||||| |||||||||||||||||||    
T  34273291 aaattgctcttctcacttttgtttttgctcattc 34273258  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 10177133 - 10177168
Alignment:
Q  125 gaaattgctcttctcccttttgtttttgctcattcac 161  Q
    |||||||||||||||| ||||||||||||||||||||    
T  10177133 gaaattgctcttctcc-ttttgtttttgctcattcac 10177168  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 31343 - 31311
Alignment:
Q  232 gaatgagcaattttgaaagggagaagagcaatt 264  Q
    |||||||||||||||||||| ||||||||||||    
T  31343 gaatgagcaattttgaaaggaagaagagcaatt 31311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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