View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5062-Insertion-4 (Length: 465)
Name: NF5062-Insertion-4
Description: NF5062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5062-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 7 - 465
Target Start/End: Original strand, 26857529 - 26857987
Alignment:
| Q |
7 |
atcaacacaaccttcactccataagattcccccaatctgaaaattaggtcaaaatatcaactacagtaaaaaacaaagtaatgaaagcacaaaacctcgt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26857529 |
atcaacacaaccttcactccataagattcccccaatctgaaaattaggtcaaaatatcaactacagtaaaaaacaaagtaatgaaagcacaaaacctcgt |
26857628 |
T |
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| Q |
107 |
taacttcttcaacatcagcatgaacatcaatcctcacatgacattgcggacacggaaacttcgaaagattacttggagcattcacaaccgccttacacga |
206 |
Q |
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| T |
26857629 |
taacttcttcaacatcagcatgaacatcaatcctcacatgacattgcggacacggaaacttcgaaagattacttggagcattcacaaccgccttacacga |
26857728 |
T |
|
| Q |
207 |
agaacaccggattttcactgcggaagagtcaacgaagaacacatgcggcatttgacagttcggacaaggtaactccgccacaccttgcgcggcggagaag |
306 |
Q |
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| T |
26857729 |
agaacaccggattttcactgcggaagagtcaacgaagaacacatgcggcatttgacagttcggacaaggtaactccgccacaccttgcgcggcggagaag |
26857828 |
T |
|
| Q |
307 |
taggtccggcaaccggcgcaacgcgcgcgtgcggtggaaggtggtggtggttgcggttggcgattcattttctgttagggagagaaggaagttgagaggt |
406 |
Q |
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| T |
26857829 |
taggcccggcaaccggcgcaacgcgcgcgtgcggtggaaggtggtggtggttgcggttggcgattcattttctgttagggagagaaggaagttgagaggt |
26857928 |
T |
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| Q |
407 |
tgtaaaatgtgagcgccaaaattgttttgttagcgggtgggtttggtgttatatatatg |
465 |
Q |
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| T |
26857929 |
tgtaaaatgtgagcgccaaaattgttttgttagcgggtgggtttggtgttatatatatg |
26857987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 7 - 465
Target Start/End: Original strand, 34633544 - 34634010
Alignment:
| Q |
7 |
atcaacacaaccttcactccataagattcccccaatctgaaaattaggtcaaaat--------atcaactacagtaaaaaacaaagtaatgaaagcacaa |
98 |
Q |
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| T |
34633544 |
atcaacacaaccttcactccataagattcccccaatctgaaaattaggtcaaaatcaaatcaaatcaactacagtaaaaaacaaagtaacgaaagcacaa |
34633643 |
T |
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| Q |
99 |
aacctcgttaacttcttcaacatcagcatgaacatcaatcctcacatgacattgcggacacggaaacttcgaaagattacttggagcattcacaaccgcc |
198 |
Q |
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| T |
34633644 |
aacctcgttaacttcttcaacatcagcatgaacatcaatcctcacatgacattgcggacacggaaacttcgaaagattacttggagcattcacaaccgcc |
34633743 |
T |
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| Q |
199 |
ttacacgaagaacaccggattttcactgcggaagagtcaacgaagaacacatgcggcatttgacagttcggacaaggtaactccgccacaccttgcgcgg |
298 |
Q |
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| T |
34633744 |
ttacacgaagaacaccggattttcactgcggaagagtcaacgaagaacacatgcggcatttgacagttcggacaaggtaactccgccacaccttgcgcgg |
34633843 |
T |
|
| Q |
299 |
cggagaagtaggtccggcaaccggcgcaacgcgcgcgtgcggtggaaggtggtggtggttgcggttggcgattcattttctgttagggagagaaggaagt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34633844 |
cggagaagtaggtccggcaaccggcgcaacgcgcgcgtgcggtggaaggtggtggtggttgcggttggcgattcattttctgttagggagagaaggaagt |
34633943 |
T |
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| Q |
399 |
tgagaggttgtaaaatgtgagcgccaaaattgttttgttagcgggtgggtttggtgttatatatatg |
465 |
Q |
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| T |
34633944 |
tgagaggttgtaaaatgtgagcgccaaaattgttttgttagcgggtgggtttggtgttatatatatg |
34634010 |
T |
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