View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5062-Insertion-5 (Length: 404)
Name: NF5062-Insertion-5
Description: NF5062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5062-Insertion-5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 8 - 404
Target Start/End: Original strand, 51196991 - 51197387
Alignment:
| Q |
8 |
caaaatgtattcttctcaaacatatggtattccatccttataggttcttctttttctctctgcttcaaaaaatctatgttatgacactgataataatgct |
107 |
Q |
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| T |
51196991 |
caaaatgtattcttctcaaacatatggtattccatccttataggttcttctttttctctctgcttcaaaaaatctatgttatgacactgataataatgct |
51197090 |
T |
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| Q |
108 |
actaaggaattatatgaaattaccactagggaaaggaattgttaattatagcattcttttacctttgacatagagaattcagcgcatgtttcttctaagt |
207 |
Q |
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| T |
51197091 |
actaaggaattatatgaaattaccactagggaaaggaattgttaattatagcattcttttacctttgacatagagaattcagcacatgtttcttctaagt |
51197190 |
T |
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| Q |
208 |
atagcttagctatacctctatattttggcacatctaaatagcacaagaacaaaaccatattataaatatttatatagaaagtatgaaaggctaattacat |
307 |
Q |
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| T |
51197191 |
atagcttagctatacctctatattttggcacatctaaatagcacaagaacaaaaccatattataaatatttatatagaaagtatgaaaggctaattacat |
51197290 |
T |
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| Q |
308 |
gttacaattctctggataaagaataaactggtaattaccttgagtggtagagcttgtaggatcaactacttgtgtgtatgcatatctatgcttaaca |
404 |
Q |
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| T |
51197291 |
gttacaatgctctggataaagaataaactggtaattaccttgagtggtagagcttgtaggatcaactacttgtgtgtatgcatatctatgcttaaca |
51197387 |
T |
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