View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5062-Insertion-6 (Length: 388)

Name: NF5062-Insertion-6
Description: NF5062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5062-Insertion-6
NF5062-Insertion-6
[»] chr5 (3 HSPs)
chr5 (157-388)||(27508540-27508771)
chr5 (8-115)||(27508391-27508498)
chr5 (300-354)||(14021393-14021447)
[»] chr3 (1 HSPs)
chr3 (173-355)||(46300648-46300830)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 157 - 388
Target Start/End: Original strand, 27508540 - 27508771
Alignment:
Q  157 atcaaggaagagattcagaacaaaattcactcaggaacagaaagagaaattgctggcttttgctgaagaacatggttggagaattcagaaacaagatgaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27508540 atcaaggaagagattcagaacaaaattcactcaggaacagaaagagaaattgctggcttttgcagaagaacatggttggagaattcagaaacaagatgaa 27508639  T
Q  257 gctgctatagaacagttttgtgctgagaattgtatcaagagaaatgttcttaaagtttggatgcacaataacaagaacactcttggtaagaaaccctaat 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27508640 gctgctatagaacagttttgtgctgagaattgtatcaagagaaatgttcttaaagtttggatgcacaataacaagaacactcttggtaagaaaccctaat 27508739  T
Q  357 taatttgaagttgttattattattccaattaa 388  Q
    ||||||||||||||||||||||||| ||||||    
T  27508740 taatttgaagttgttattattattctaattaa 27508771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 27508391 - 27508498
Alignment:
Q  8 catcttgcaactccggtggcacctcacagaccgttggctctccctgctgctgcttccggtggtggaatgagcagagatgatgatgatatgtcaaacccta 107  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27508391 catcttgcaactccggtggcacatcacagaccgttggctctccctgctgctgcttccggtggtggaatgagcagagaagatgatgatatgtcaaacccta 27508490  T
Q  108 gcagtagc 115  Q
    ||||||||    
T  27508491 gcagtagc 27508498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 14021447 - 14021393
Alignment:
Q  300 atgttcttaaagtttggatgcacaataacaagaacactcttggtaagaaacccta 354  Q
    |||||||||| ||||||||||| || |||||  |||||||||||||||| |||||    
T  14021447 atgttcttaaggtttggatgcataacaacaaacacactcttggtaagaagcccta 14021393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 173 - 355
Target Start/End: Complemental strand, 46300830 - 46300648
Alignment:
Q  173 agaacaaaattcactcaggaacagaaagagaaattgctggcttttgctgaagaacatggttggagaattcagaaacaagatgaagctgctatagaacagt 272  Q
    |||||||||||||| |||||||| || || ||  |||| || ||||| ||  ||  ||| ||||||||||||||  ||||||||| ||| || ||||| |    
T  46300830 agaacaaaattcacgcaggaacaaaaggataagatgcttgcatttgcggagaaaattgggtggagaattcagaaggaagatgaaggtgcaattgaacaat 46300731  T
Q  273 tttgtgctgagaattgtatcaagagaaatgttcttaaagtttggatgcacaataacaagaacactcttggtaagaaaccctaa 355  Q
    | ||||||||||||| |||||||||| |||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  46300730 tctgtgctgagaattttatcaagagacatgtgcttaaggtttggatgcacaataacaagcacactcttggtaagaaaccctaa 46300648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University