View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5062-Insertion-7 (Length: 302)
Name: NF5062-Insertion-7
Description: NF5062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5062-Insertion-7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 5 - 302
Target Start/End: Original strand, 3480200 - 3480497
Alignment:
| Q |
5 |
acaggttctgcatacaacaaaaatgtctttgatccaaatagttctgtctcaaaagttatttccctttttgcaggtactcctttctccattacttctctct |
104 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3480200 |
acaggttctgcatacaacaaaaatgtctttgatccaagtagttctgtctcaaaagttatttccctttttgcaggtactcctttctccattacttctctct |
3480299 |
T |
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| Q |
105 |
taaaatcttgagactccttcacacctgctcccgtgaaaatttcaacatctgtttttcctatgaggtcctggaaatttatgtgcaagtcaaataaaccatg |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3480300 |
taaaatcttgagactccttcacacctgctcccgtgaaaatttcaacatccgtttttcctatgaggtcctggaaatttatgtgcaagtcaaataaatcatg |
3480399 |
T |
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| Q |
205 |
aaaaagaaagaaaactctattctaaagaaatttcactacaaattttatgctgcttttggtttaatttaaaatcacaatgcaattcaatcacaaccttg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3480400 |
aaaaagaaagaaaactctattctaaagaaatttcactacaaattttatgctgcttttggtttaacttaaaatcacaatgcaattcaatcacaaccttg |
3480497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 5 - 276
Target Start/End: Original strand, 3455598 - 3455870
Alignment:
| Q |
5 |
acaggttctgcatacaacaaaaatgtctttgatccaaatagttctgtctcaaaagttatttccctttttgcaggtactcctttctccattacttctctct |
104 |
Q |
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||||||||| |||| | |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3455598 |
acaggttctacatatatcaaaaatgtcttaaatccaaatagttctgtctcaaaagttatttccttttttgcaggtactcctttctccattacttctctct |
3455697 |
T |
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| Q |
105 |
taaaatcttgagactccttcacacctgctcccgtgaaaatttcaacatctgtttttcctatgaggtcctgg-aaatttatgtgcaagtcaaataaaccat |
203 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||| ||| ||| | |||||| || ||| ||| |
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| T |
3455698 |
taaaatcttgagattccttcacacctgctcccgtgaaaatttcgacatctgtttttcctataatgtcctggaaaaattacgagcaagtaaattaactcat |
3455797 |
T |
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| Q |
204 |
gaaaaagaaagaaaactctattctaaagaaatttcactacaaattttatgctgcttttggtttaatttaaaat |
276 |
Q |
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||| | |||||| |||||||| ||||||| |||| | |||||||||||||||||||||||||| |||||| |
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| T |
3455798 |
gaagagcaaagaatactctattttaaagaagtttctgcagaaattttatgctgcttttggtttaatataaaat |
3455870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 48694748 - 48694575
Alignment:
| Q |
5 |
acaggttctgcatacaacaaaaatgtctttgatccaaatagttctgtctcaaaagttatttccctttttgcaggtactcctttctccattacttctctct |
104 |
Q |
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||||||||| |||| | ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| |||| ||||| |||| |
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| T |
48694748 |
acaggttctacataaatcaagaatgtctttgatccaaatagttctgtctcaaaagtgatttccctttttgcaggcaatcctttttccaaaacttccctct |
48694649 |
T |
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| Q |
105 |
taaaatcttgagactccttcacacctgctcccgtgaaaatttcaacatctgtttttcctatgaggtcctggaaa |
178 |
Q |
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|||||||||| |||||| ||||| | ||| ||||| ||||| ||||| ||||||||||| | |||||||||| |
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| T |
48694648 |
taaaatcttggttctccttaacaccagatccagtgaatatttcgacatcagtttttcctattatgtcctggaaa |
48694575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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