View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5062-Insertion-8 (Length: 270)
Name: NF5062-Insertion-8
Description: NF5062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5062-Insertion-8 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 268
Target Start/End: Original strand, 26721978 - 26722238
Alignment:
| Q |
8 |
ggattatgatttgaggttgtaatttgagaaaatggttcaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26721978 |
ggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaat |
26722077 |
T |
|
| Q |
108 |
tctcataatcacgaaaccaaaaggcatcattccttctccaattaattttttcttctcactcagaataatcatgcatcttctcattcaatcttattcatta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26722078 |
tctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcagaataatcatgcatcttctcattcaatcttattcatta |
26722177 |
T |
|
| Q |
208 |
ttctcatgtgaatcagttcatcttcatctttgcgtaatctgtaaatgcatgttactttttg |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
26722178 |
ttctcatgtgaatcagttcatcttcatctttgcgtaatctgtaaatccatattactttttg |
26722238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 29 - 270
Target Start/End: Complemental strand, 45116923 - 45116682
Alignment:
| Q |
29 |
atttgagaaaatggttcaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaaccaaa |
128 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45116923 |
atttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaaccaaa |
45116824 |
T |
|
| Q |
129 |
aggcatcattccttctccaattaattttttcttctcactcagaataatcatgcatcttctcattcaatcttattcattattctcatgtgaatcagttcat |
228 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45116823 |
aggcatcattccttctcaaattaattttttcttctcactcagaataatcatgcatcttctcattcaatcttattcattattctcatgtgaatcagttcat |
45116724 |
T |
|
| Q |
229 |
cttcatctttgcgtaatctgtaaatgcatgttactttttggt |
270 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45116723 |
cttcatcttttcgtaatctgtaaatgcatgttactttttggt |
45116682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 29 - 270
Target Start/End: Original strand, 2987455 - 2987696
Alignment:
| Q |
29 |
atttgagaaaatggttcaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaaccaaa |
128 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2987455 |
atttgagaaaatggtttaatactctatttgttgtgtaatttccatcaatgttctcactactcaaagacaaaactccaattctcataatcacgaaaccaaa |
2987554 |
T |
|
| Q |
129 |
aggcatcattccttctccaattaattttttcttctcactcagaataatcatgcatcttctcattcaatcttattcattattctcatgtgaatcagttcat |
228 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2987555 |
aggcatcattccttctcaaattaattttttcttctcactcagaataatcatgcatcttctcattcaatcttattcattattctcatgtgaatcagttcat |
2987654 |
T |
|
| Q |
229 |
cttcatctttgcgtaatctgtaaatgcatgttactttttggt |
270 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2987655 |
cttcatcttttcgtaatctgtaaatgcatgttactttttggt |
2987696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University