View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5062_high_1 (Length: 746)

Name: NF5062_high_1
Description: NF5062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5062_high_1
NF5062_high_1
[»] scaffold0072 (1 HSPs)
scaffold0072 (1-736)||(44194-44929)


Alignment Details
Target: scaffold0072 (Bit Score: 688; Significance: 0; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 1 - 736
Target Start/End: Complemental strand, 44929 - 44194
Alignment:
Q  1 caattctctgaataacaggaaagggtccaaaatatctgaggccgagtttctgattctggtgaagcgcaagagaatgttgacgatacggttaaagcttgac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  44929 caattctctgaataacaggaaagggtccaaaatatctaaggcctagtttctgattctggtgaagcgcaagagaatgttgacgatacggttgaagcttaac 44830  T
Q  101 taagaccatatcacccacttgaaattcagcaaatcttcgtttagaatcagcatacttcttcatgatttgttgagcgcggtgtaaattgaccttaaggagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44829 taagaccatatcacccacttgaaattcagcaaatcttcgtttagaatcagcatacttcttcatgatttgttgagcgcggtgtaaattgaccttaaggagc 44730  T
Q  201 tgcaaggtctcatctctttccaccagtagagattgcagcgatggagtaacatctgcagcagtatcatatttgataaggataggaggatctctgccataca 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44729 tgcaaggtctcatctctttccaccagtagagattgcagtgatggagtaacatctgcagcagtatcatatttgataaggataggaggatctctgccataca 44630  T
Q  301 caaccttgaatggagtcattccaatactgcactggtacgatgaattgtaccaaaattcagcccaatcaagtaacttcgaccatttgttaggagattgacc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  44629 caaccttgaatggagtcattccaatactgcactggtacgatgaattgtaccaaaattcagcccaatcaagtaacttagaccatttgttaggagcttgacc 44530  T
Q  401 tgcaaagcaccgtaaatacatctcaacccatttattgatagcttctgtttgtccgtcggattgggggtgatacgctgagctcatagataaagtggtgcca 500  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44529 tgcaaagcaccgtaaatacatctcaacacatttattgacagcttctgtttgtccgtcggattgggggtgatacgctgagctcatagataaagtggtgcca 44430  T
Q  501 cttagcttaaacaaatttttccagaaagagctggtgaacaccttatcacgatccgacacaatactcttgggaaatccatgtaacttaactacagtatgta 600  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44429 cttagcttaaacaaattttgccagaaagagctggtgaacaccttatcacgatccgacacaatactcttgggaaatccatgtaacttaactacaatatgta 44330  T
Q  601 gaaaagcttctgcaactttcaagctagtaaaatcagatttcaagggtacaaaatggccatatttggagagcctatcaaccactaccattatcacagtgaa 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44329 gaaaagcttctgcaactttcaagctagtaaaatcagatttcaagggtacaaaatggccatatttggagagcctatcaaccactaccattatcacagtgaa 44230  T
Q  701 gccatgtgaaggtggaagacccgtgatgatgtccat 736  Q
    ||||||||||||||||||||||||||||| ||||||    
T  44229 gccatgtgaaggtggaagacccgtgatgaagtccat 44194  T

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