View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5062_high_14 (Length: 238)
Name: NF5062_high_14
Description: NF5062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5062_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26857313 - 26857534
Alignment:
| Q |
1 |
acaacatcaactaatcaaaactaggtgacataaacaatctaaaatcattctctaagcaacacaacaatcattattaggaccctaagaaatagcttattca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26857313 |
acaacatcaactaatcaaaactaggtgacgtaaacaatctaaaatcattctctaagcaacacaacaatcattattaggaccctaagaaatagcttattca |
26857412 |
T |
|
| Q |
101 |
taagcatttattttttaagctgcaaaaattaagatccaaacagcacacactcatcagttaactcaacagcaactaatcaaatcaaagtcacataaacaat |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26857413 |
taagcatttattttataagctgcaaaaattaagatccaaacagcacacactcatcagttaactcaacagcaactaatcaaatcaaagtcacataaacaat |
26857512 |
T |
|
| Q |
201 |
gcaaaatcactccctaatcaac |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
26857513 |
gcaaaatcactccctaatcaac |
26857534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 26965072 - 26965134
Alignment:
| Q |
8 |
caactaatcaaaactaggtgacataaacaatctaaaatcattctctaagcaacacaacaatca |
70 |
Q |
| |
|
|||||||||||||||| || | |||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
26965072 |
caactaatcaaaactaagtaagataaacaatctaaaatcattctctaatcaatacaacaatca |
26965134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34633328 - 34633549
Alignment:
| Q |
1 |
acaacatcaactaatcaaaactaggtgacataaacaatctaaaatcattctctaagcaacacaacaatcattattaggaccctaagaaatagcttattca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
34633328 |
acaacatcaactaatcaaaactaggtgccataaacaatctaaaatctttctctaagcaacacaacaatcattattaggaccctaagaaatatcttattca |
34633427 |
T |
|
| Q |
101 |
taagcatttattttttaagctgcaaaaattaagatccaaacagcacacactcatcagttaactcaacagcaactaatcaaatcaaagtcacataaacaat |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34633428 |
taagcatttattttataagctgcaaaaattaagatccaaacagcacatactcgtcagttaactcaacagcaactaatcaaatcaaagtcacataaacaat |
34633527 |
T |
|
| Q |
201 |
gcaaaatcactccctaatcaac |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
34633528 |
gcaaaatcactccctaatcaac |
34633549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 34671274 - 34671336
Alignment:
| Q |
8 |
caactaatcaaaactaggtgacataaacaatctaaaatcattctctaagcaacacaacaatca |
70 |
Q |
| |
|
|||||||||||||||| || | |||||||||||||||||||||||||| ||| |||||||||| |
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|
| T |
34671274 |
caactaatcaaaactaagtaagataaacaatctaaaatcattctctaatcaatacaacaatca |
34671336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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