View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5062_high_2 (Length: 578)
Name: NF5062_high_2
Description: NF5062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5062_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 12 - 560
Target Start/End: Original strand, 45801580 - 45802141
Alignment:
| Q |
12 |
tacactcattgattgatcgataatgatttatgtgacagaagaaacgatagagtcaaagcatagtataaaatagatatggtggagagatagagggttttgt |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45801580 |
tacactcattgattgatcgatgatgatttatgtgacagaagaaacgatagagtcaaagcatagtataaaatagatatggtggagagatagagggttttgt |
45801679 |
T |
|
| Q |
112 |
tttggtttgcttagttaactatatatgggggagaagttgaagagactacacaagaatcggtttttatggctatcattttggtgaatgaaagatatgtact |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45801680 |
tttggtttgcttagttaactatatatggtggagaagttgaagagactgcacaagaatcggtttttatggctatcattttggtgaatgaaagatatgtact |
45801779 |
T |
|
| Q |
212 |
tgctttgactcttttaccctttttccaattgctgtcgtatgcaacgggtcagtcaccgggtcgggttttcttcttgcgtattgcatgggttggattgaga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45801780 |
tgctttgactcttttaccctttttccaattgctgtcgtatgcaacgggtcagtcaccgggtcgggttttcttcttgcgtattgcatgggttggattgaga |
45801879 |
T |
|
| Q |
312 |
gacttgagatggaggagagt-------------agtgactctgaaaattctttgttgatggctttgggtcaatttgtcattatcttggactcgtggggta |
398 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45801880 |
gacttgaggtggaggagagtagtgtttggaatgagtgactctgaaaattctttgttgatggctttgggtcaatttgtcattatcttggactcgtggggta |
45801979 |
T |
|
| Q |
399 |
tgggtaaggtgcttgattctttcactttgcttcccttcagttacttctatttttatatattttgttaccttaacttcgtacaagggacttaggatttatt |
498 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45801980 |
tgggtaaggtgcttgattctttccctttgcttcccttcagttacttctatttttatatattttgttaccttaacttcgtacaagggacttaggatttatt |
45802079 |
T |
|
| Q |
499 |
tttgttgcaaggcaccttcctagatatttctccaaagtattcattttttaccgatcaatcat |
560 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45802080 |
gttgttacaaggcaccttcctagatatttctccaaagtattcattttttaccaatcaatcat |
45802141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University