View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5062_high_4 (Length: 409)
Name: NF5062_high_4
Description: NF5062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5062_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 6 - 284
Target Start/End: Complemental strand, 108945 - 108667
Alignment:
| Q |
6 |
agttacccagtagcaaaacatctgtgaaaccatgttttgcatattgggtccagaagccgaatatatgttaaaaagtgcaaaagtaataaaaattatactg |
105 |
Q |
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| T |
108945 |
agttacccagtagcaaaacatctctgaaaccatgttttgcatattgggtccagaagccgaatatatgttaaaaagtgcaaaagtaataaaagttatactg |
108846 |
T |
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| Q |
106 |
aagttaacctctaaattgttgaaatttttctgcatttttcacttaattacctttttctgtatgtattaaataaacaaccctgaatcaaatattagtgatg |
205 |
Q |
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| T |
108845 |
aagttaacctctaaattgttgaaatttttctgcatttttctcttaattacctttttctgtatgtattaaataaacaaccctgaatcaaatattagtgatg |
108746 |
T |
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| Q |
206 |
actgaatcctttcatttttagcactgaattgagtttcaaacaggtaaagaaagctttaaggaatgacgcacaccagata |
284 |
Q |
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| T |
108745 |
actgaatcctttcatttttagcactgaattgagtttcaaacaggtaaagaaagctttaaagaatgacgcacaccagata |
108667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 305 - 389
Target Start/End: Complemental strand, 108430 - 108346
Alignment:
| Q |
305 |
ttatcgaaattattaatcttacttctctggtagttgcaatgaagtgtacagttcccgtaaaatcttcacaatttctgagtagtgc |
389 |
Q |
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| T |
108430 |
ttatcgaaattattaatcttacttctctgggagttgcaacgaagggtacagttcacgtaaaatcttcacaatttctgagtagtgc |
108346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 286 - 388
Target Start/End: Complemental strand, 89343 - 89241
Alignment:
| Q |
286 |
attatatgcaatctttcagttatcgaaattattaatcttacttctctggtagttgcaatgaagtgtacagttcccgtaaaatcttcacaatttctgagta |
385 |
Q |
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| T |
89343 |
attatatgctatcattcagttatcgaaattattaatcttacttctctgggagttgcaacgaagggtacagttcacgtaaaatcctcacaacttcggagta |
89244 |
T |
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| Q |
386 |
gtg |
388 |
Q |
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||| |
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| T |
89243 |
gtg |
89241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 253
Target Start/End: Complemental strand, 2708414 - 2708331
Alignment:
| Q |
170 |
attaaataaacaaccctgaatcaaatattagtgatgactgaatcctttcatttttagcactgaattgagtttcaaacaggtaaa |
253 |
Q |
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| T |
2708414 |
attaaataaacaaccttgaatcggatatcaatgaggactgaatcttttcatatgtagcactgaattgagtttcaaacaggtaaa |
2708331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 283
Target Start/End: Complemental strand, 89457 - 89372
Alignment:
| Q |
197 |
ttagtgatgactgaatcctttcatttttagcactgaattgagtttcaaacaggtaaagaaagctttaaggaatgacgcacaccagat |
283 |
Q |
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| T |
89457 |
ttagcgatgactgaatcctttcatttt-agcattgaattgagtttcaaacaagtaaataaagctttaatgaatgtggcacatcagat |
89372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 388
Target Start/End: Complemental strand, 2708287 - 2708185
Alignment:
| Q |
286 |
attatatgcaatctttcagttatcgaaattattaatcttacttctctggtagttgcaatgaagtgtacagttcccgtaaaatcttcacaatttctgagta |
385 |
Q |
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|||||||||||||||| |||| ||||||||||||||| ||| ||||| |||||||| | || | || | | |||||||||||||| | ||||||||| |
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| T |
2708287 |
attatatgcaatctttaagttgctgaaattattaatcttccttttctgggagttgcaacgtagggcactggttacgtaaaatcttcaccagttctgagta |
2708188 |
T |
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| Q |
386 |
gtg |
388 |
Q |
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||| |
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| T |
2708187 |
gtg |
2708185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 90058 - 89964
Alignment:
| Q |
16 |
tagcaaaacatctgtgaaaccatgttttgcatattggg-tccagaagccgaatatatgttaaaaagtgcaaaagtaataaaaattatactgaagt |
109 |
Q |
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||||||||| || |||||||||||| || | || |||| |||||| || |||||| |||||||| || || || |||||||| |||||||||||| |
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| T |
90058 |
tagcaaaacctcagtgaaaccatgtgttacgtactggggtccagaggctgaatatgtgttaaaaggtacagaaataataaaagttatactgaagt |
89964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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