View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5062_high_6 (Length: 371)
Name: NF5062_high_6
Description: NF5062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5062_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 152 - 361
Target Start/End: Complemental strand, 14597047 - 14596838
Alignment:
| Q |
152 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcg |
251 |
Q |
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| T |
14597047 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaggatgtggttacagggtaccgcatgcacaatcg |
14596948 |
T |
|
| Q |
252 |
tggatggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatcagcaccaattaatcttactgatcgactacaccaggtgctaagatgggcc |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14596947 |
tggatggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatctgcaccaattaatcttactgatcgactacaccaggtgctaagatgggcc |
14596848 |
T |
|
| Q |
352 |
acaggttctg |
361 |
Q |
| |
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|||||||||| |
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| T |
14596847 |
acaggttctg |
14596838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 152 - 361
Target Start/End: Original strand, 14611523 - 14611732
Alignment:
| Q |
152 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcg |
251 |
Q |
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|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| || |
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| T |
14611523 |
catgtaggtacgaagagaagacagaatggggagacagagtgggatggatttatggatcagtgacagaggacgtcgttacaggttaccgcatgcacaaccg |
14611622 |
T |
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| Q |
252 |
tggatggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatcagcaccaattaatcttactgatcgactacaccaggtgctaagatgggcc |
351 |
Q |
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| T |
14611623 |
tggatggcgttctgtatattgcgtgaccaagcgagatgcatttcgcggatcagcaccaattaaccttactgatcgactacaccaggtgctaagatgggcc |
14611722 |
T |
|
| Q |
352 |
acaggttctg |
361 |
Q |
| |
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|||||||||| |
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| T |
14611723 |
acaggttctg |
14611732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 14597198 - 14597098
Alignment:
| Q |
1 |
ctgtcatttcttgttggtatgtatactttgtcaaacacaaacatataagtcataaaaaatatttttgtacttatatacaatattatatatgaaaagacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597198 |
ctgtcatttcttgttggtatgtatactttgtcaaacacaaacatataagtcataaaaaatatttttgtacttatatacaatattatatatgaaaagacaa |
14597099 |
T |
|
| Q |
101 |
c |
101 |
Q |
| |
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| |
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|
| T |
14597098 |
c |
14597098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 157 - 359
Target Start/End: Complemental strand, 15417259 - 15417057
Alignment:
| Q |
157 |
aggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcgtggat |
256 |
Q |
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|||||||| || || |||||||||||||| ||| | || ||||||||||| |||||||||||||| || || || || ||| | |||||||| ||||||| |
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| T |
15417259 |
aggtatgaggataaaacagaatggggagatagaataggttggatttatggatcagtgacagaagatgttgtaactggttacagaatgcacaaccgtggat |
15417160 |
T |
|
| Q |
257 |
ggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatcagcaccaattaatcttactgatcgactacaccaggtgctaagatgggccacagg |
356 |
Q |
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|| | || ||||||| | || || |||| || || |||||| ||||||| || ||||| || ||||| ||||||| || ||||||||||| ||||| |
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| T |
15417159 |
ggagatcgatatattgcatcacaaaaagagacgctttccgtggaacagcacctataaatctcaccgatcgtttacaccaagttctaagatgggcaacagg |
15417060 |
T |
|
| Q |
357 |
ttc |
359 |
Q |
| |
|
||| |
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|
| T |
15417059 |
ttc |
15417057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 299
Target Start/End: Complemental strand, 12192859 - 12192718
Alignment:
| Q |
158 |
ggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcgtggatg |
257 |
Q |
| |
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|||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||| || || || || || || ||||| || | ||||||||| | ||||| |
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| T |
12192859 |
ggtatgaagataagaccgaatggggagatagagttggatggatttacgggtcggtaaccgaggatgttgtgacaggttatagaatgcacaatagaggatg |
12192760 |
T |
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| Q |
258 |
gcgttctgtatattgtgtaaccaagcgagatgcatttcgtgg |
299 |
Q |
| |
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| | ||||| |||||||| |||||| | ||||| || ||||| |
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| T |
12192759 |
gaggtctgtgtattgtgtgaccaagagggatgccttccgtgg |
12192718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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