View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5062_low_10 (Length: 286)
Name: NF5062_low_10
Description: NF5062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5062_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 33379783 - 33380055
Alignment:
| Q |
1 |
accacaacttgtttctttgatacaacagaacacttatctttcttctcatcttgattcatctgctgttgacgacactctagactgcagaaagcactatctc |
100 |
Q |
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| T |
33379783 |
accacaacttgtttctttgataccacagaacacttatctttcttctcatcttgattcatctgctgttgacgacactctagactgcagaaagcactatctc |
33379882 |
T |
|
| Q |
101 |
ctctgcaaatttaatttttcataaattagttccaattatcacacactcttctatatccacacaaaattaataatnnnnnnncttagtatgtataattaat |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33379883 |
ctctgcaaatttaatttttcataaattaattccaattatcacacacccttctatatccacacaaaattaataataaaaaaacttagtatgtataattaat |
33379982 |
T |
|
| Q |
201 |
aaaaaatagtcttgtgaacacatctcatatcgtaaaatgttgcagagacatttgatacgttagggcacaggtt |
273 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33379983 |
aaaaaatagtcttgtgaacacatctcatatagtaaaatgttgcagagacatttgatacgttagggcacaggtt |
33380055 |
T |
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