View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5062_low_13 (Length: 269)
Name: NF5062_low_13
Description: NF5062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5062_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 18452968 - 18452723
Alignment:
| Q |
5 |
aaacagagagataacttggtacgaaccagtgatgagattcatatcagaaggaacaatacattcatcaaaaccagtatcatcatcctctccagtttcagca |
104 |
Q |
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| T |
18452968 |
aaacagagagatatcttggtacgaaccagtgatgagattcatatcagaaggaacaatacattcatcaaaaccagtatcatcatcctctccagtttcagca |
18452869 |
T |
|
| Q |
105 |
ggaagacgcgtaccatgtccactataatgaacaaacagaacatcaccatcctccgacgatctcaccagctccgacagcacacttcttatgttctttcctg |
204 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
18452868 |
ggaagacgagtaccatgtccactataatgaacaaacagaacatcaccatcctccgacgatctcaccagctccgacagaacacgtcttatgttctttcctg |
18452769 |
T |
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| Q |
205 |
tcggctccgtgtacgacgaatccgtgtcgatcaaaatagtgatgtc |
250 |
Q |
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| T |
18452768 |
tcggctccgtgtacgacgaatccgtgtcgatcaaaatagtgatgtc |
18452723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 26837200 - 26837089
Alignment:
| Q |
28 |
aaccagtgatgagattcatatcagaaggaacaatacattcatcaaaaccagtatcatcatcctctccagtttcagcaggaagacgcgtaccatgtccact |
127 |
Q |
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||||||| |||||||||||||| | |||||||| || |||||| | ||||||||||| ||||| || || |||||||| ||||| || ||||| ||||| |
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| T |
26837200 |
aaccagtaatgagattcatatctgtgggaacaatgcactcatcatagccagtatcatcgtcctccccggtctcagcagggagacgggtgccatgaccact |
26837101 |
T |
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| Q |
128 |
ataatgaacaaa |
139 |
Q |
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| T |
26837100 |
atagtggacaaa |
26837089 |
T |
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