View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5062_low_2 (Length: 737)
Name: NF5062_low_2
Description: NF5062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5062_low_2 |
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| [»] scaffold0072 (3 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 24 - 297
Target Start/End: Original strand, 44954 - 45227
Alignment:
| Q |
24 |
tgcctccatctgctaagattcatccagttttccacattgtgaatttgaaaccttgcaagggggatcatacaatgcagtacctaccactacccttaacaac |
123 |
Q |
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| T |
44954 |
tgcctccatctgctaagattcatctagttttccacattgtgaatttgaaaccttgcaagggggatcatacaatgcagtacctaccactacccttaacaac |
45053 |
T |
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| Q |
124 |
cactgaaactggaccagtattacagcctgaagatattttacaatcaagaacattattggtgaatggaaaacaggttccacaggtcttgattaagtggtct |
223 |
Q |
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| T |
45054 |
cactgaaactggaccagtattacagcctgaagatattttacaatcaagaacattattggtgaatggaaaacaggttccacaggtcttgattaagtggtct |
45153 |
T |
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| Q |
224 |
accttaccggcatctgaagcaacttgggaaaattgggaggatatctctaacaattaccctaacgctaaccttga |
297 |
Q |
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| T |
45154 |
accttaccagcatctgaagcaacttgggaaaattgggaggatatctctaacaattaccctaacgctaaccttga |
45227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 327 - 475
Target Start/End: Original strand, 40642 - 40790
Alignment:
| Q |
327 |
aagctttatgcttttctgcactatcatttcattccctgtacatttcttcaactggttttaaccatttttccatcaataatattcagattattatcatttt |
426 |
Q |
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| T |
40642 |
aagctttatgcttttctgcactatcatttcattccctgtacctttcttcaattggttttaaccatttttccatcaataatatttagattattatcatttt |
40741 |
T |
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| Q |
427 |
actgtcatttcaatataacagtaccttttatcatatcaaatcataacat |
475 |
Q |
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| T |
40742 |
actgtcatttcaatataacagtacctattatcatatcaaatcataacat |
40790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 327 - 474
Target Start/End: Original strand, 45472 - 45619
Alignment:
| Q |
327 |
aagctttatgcttttctgcactatcatttcattccctgtacatttcttcaactggttttaaccatttttccatcaataatattcagattattatcatttt |
426 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45472 |
aagctttatgcttttctgcactatcatttcattccctgtacctttcttcaattggttttaaccatttttccatcaataatatttagattattatcatttt |
45571 |
T |
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| Q |
427 |
actgtcatttcaatataacagtaccttttatcatatcaaatcataaca |
474 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45572 |
actgtcatttcaatataacagtacctattatcatatcaaatcataaca |
45619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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