View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5062_low_4 (Length: 453)

Name: NF5062_low_4
Description: NF5062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5062_low_4
NF5062_low_4
[»] chr3 (12 HSPs)
chr3 (173-404)||(3872789-3873023)
chr3 (280-433)||(10187348-10187501)
chr3 (47-175)||(10081001-10081129)
chr3 (298-437)||(11488628-11488767)
chr3 (47-175)||(10187961-10188089)
chr3 (280-433)||(10080378-10080525)
chr3 (340-437)||(5968505-5968602)
chr3 (279-412)||(11494851-11494984)
chr3 (342-404)||(2922251-2922313)
chr3 (173-215)||(11494047-11494089)
chr3 (340-391)||(4133001-4133052)
chr3 (29-96)||(28696851-28696918)
[»] chr4 (4 HSPs)
chr4 (280-437)||(5991213-5991370)
chr4 (29-175)||(5991979-5992122)
chr4 (29-96)||(8570891-8570958)
chr4 (29-96)||(54188210-54188277)
[»] scaffold0603 (1 HSPs)
scaffold0603 (298-437)||(2113-2252)
[»] chr5 (2 HSPs)
chr5 (343-437)||(16449475-16449569)
chr5 (28-112)||(16450501-16450585)
[»] chr1 (1 HSPs)
chr1 (298-437)||(17314447-17314586)
[»] chr8 (2 HSPs)
chr8 (293-435)||(18390743-18390885)
chr8 (29-73)||(18391784-18391828)
[»] chr7 (1 HSPs)
chr7 (29-96)||(3367298-3367365)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 8e-65; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 173 - 404
Target Start/End: Complemental strand, 3873023 - 3872789
Alignment:
Q  173 tctacttgaccaacaggaggaagaaatattaagtcaagacagt---agaaacacaaaatgtggaaatgcataaatgttattcattgaactaatatactag 269  Q
    |||| ||||| |||||||| || | ||||||||||||||||||   | |||||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  3873023 tctaattgacaaacaggagcaa-acatattaagtcaagacagttagataaacacaaaatgtggaaatgcataaatgatattcattgaattaataaactag 3872925  T
Q  270 aggagtatgt-agagactcacctagacatgaaacttatgtcatcaattcgtcatcaataattatggcaggtatgtgagcaattttacgccactctctccc 368  Q
    || | ||| | | ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| | |||||||||||||| |||||   ||||    
T  3872924 agaaatatctcaaagactcacctagacatgaaacttatgtgatcagttcgtcatcaataattatggcaggcacgtgagcaattttacaccacttcttccc 3872825  T
Q  369 tcgcttcctccgcaaacttgcttcaagtaatggaca 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  3872824 tcgcttcctccgcaaacttgcttcaagtaatggaca 3872789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 280 - 433
Target Start/End: Complemental strand, 10187501 - 10187348
Alignment:
Q  280 agagactcacctagacatgaaacttatgtcatcaattcgtcatcaataattatggcaggtatgtgagcaattttacgccactctctccctcgcttcctcc 379  Q
    ||||||||||| ||| |||||||| |||| || |||| ||||||||||||||||||||||||||||  ||| ||| |||||||| ||||| |||| |||     
T  10187501 agagactcaccaagatatgaaactcatgtgattaatttgtcatcaataattatggcaggtatgtgaagaatcttatgccactctttcccttgcttgctct 10187402  T
Q  380 gcaaacttgcttcaagtaatggacagcgagtcaaacttagtacagaaagagagg 433  Q
    |||| | |||||||||||||||||||||||| |||||||||||||||| |||||    
T  10187401 gcaaccctgcttcaagtaatggacagcgagttaaacttagtacagaaatagagg 10187348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 47 - 175
Target Start/End: Complemental strand, 10081129 - 10081001
Alignment:
Q  47 aaatttataccttagattccactgctgccattttgatgcaagccatcaatatcacttgaatccctttgtcgatctgcaaacagagtagacataaaataaa 146  Q
    |||||| |||||||||||||||||||||||| ||| |||||||||||||| ||||||||  ||||| |||||||||||||||| | ||| ||||||||||    
T  10081129 aaatttgtaccttagattccactgctgccatcttgttgcaagccatcaatctcacttgatgcccttggtcgatctgcaaacagggcagagataaaataaa 10081030  T
Q  147 tcgaaaataaagactaagccaccaaatct 175  Q
    | ||||||||| |||||||||||||||||    
T  10081029 ttgaaaataaaaactaagccaccaaatct 10081001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 298 - 437
Target Start/End: Original strand, 11488628 - 11488767
Alignment:
Q  298 gaaacttatgtcatcaattcgtcatcaataattatggcaggtatgtgagcaattttacgccactctctccctcgcttcctccgcaaacttgcttcaagta 397  Q
    |||||| |||| |||||||| ||||||||||||||| |||||||||||||||| |||| ||||||| ||||| |||||||||||||| ||||||| || |    
T  11488628 gaaactcatgtgatcaattcatcatcaataattatgacaggtatgtgagcaatcttactccactctttcccttgcttcctccgcaaaattgcttcgagca 11488727  T
Q  398 atggacagcgagtcaaacttagtacagaaagagaggaagg 437  Q
    |||| |||||||||| | ||||||| ||||||||||||||    
T  11488728 atgggcagcgagtcatatttagtactgaaagagaggaagg 11488767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 47 - 175
Target Start/End: Complemental strand, 10188089 - 10187961
Alignment:
Q  47 aaatttataccttagattccactgctgccattttgatgcaagccatcaatatcacttgaatccctttgtcgatctgcaaacagagtagacataaaataaa 146  Q
    |||||| |||||||||||||||||||||||| ||| |||||||||||||| ||||||||  ||||| |||||||||||||||| | ||| ||||||||||    
T  10188089 aaatttgtaccttagattccactgctgccatcttgttgcaagccatcaatctcacttgatgcccttggtcgatctgcaaacagggcagagataaaataaa 10187990  T
Q  147 tcgaaaataaagactaagccaccaaatct 175  Q
    | ||||||||| |||||| ||||||||||    
T  10187989 ttgaaaataaaaactaagtcaccaaatct 10187961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 280 - 433
Target Start/End: Complemental strand, 10080525 - 10080378
Alignment:
Q  280 agagactcacctagacatgaaacttatgtcatcaattcgtcatcaataattatggcaggtatgtgagcaattttacgccactctctccctcgcttcctcc 379  Q
    ||||||||||| ||| |||||||| |||| || |||| ||||||||||||||||||||||||||||  ||| ||||||||||      || |||| |||     
T  10080525 agagactcaccaagatatgaaactcatgtgattaatttgtcatcaataattatggcaggtatgtgaagaatcttacgccact------cttgcttgctct 10080432  T
Q  380 gcaaacttgcttcaagtaatggacagcgagtcaaacttagtacagaaagagagg 433  Q
    |||| | |||||||||||||||||||||||| |||||||||||||||| |||||    
T  10080431 gcaaccctgcttcaagtaatggacagcgagttaaacttagtacagaaatagagg 10080378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 340 - 437
Target Start/End: Complemental strand, 5968602 - 5968505
Alignment:
Q  340 atgtgagcaattttacgccactctctccctcgcttcctccgcaaacttgcttcaagtaatggacagcgagtcaaacttagtacagaaagagaggaagg 437  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||||||||| || ||||| |||||| |||||| ||||||||| ||||||||||||||    
T  5968602 atgtgagcaatcttacgccactctttcccttgcttcctccgcaaacttgcatccagtaacggacagtgagtcatacttagtactgaaagagaggaagg 5968505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 412
Target Start/End: Original strand, 11494851 - 11494984
Alignment:
Q  279 tagagactcacctagacatgaaacttatgtcatcaattcgtcatcaataattatggcaggtatgtgagcaattttacgccactctctccctcgcttcctc 378  Q
    ||||||||||||  |||| || ||| |||| |||||||||||||| ||||||||||  || || |||||||| |||||||| ||| |||||||||||||     
T  11494851 tagagactcacccggacaagatactcatgtgatcaattcgtcatcgataattatggagggaatatgagcaatcttacgccattctttccctcgcttcctt 11494950  T
Q  379 cgcaaacttgcttcaagtaatggacagcgagtca 412  Q
     ||||  ||||||  ||||||||||||| |||||    
T  11494951 tgcaattttgctttcagtaatggacagcaagtca 11494984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 342 - 404
Target Start/End: Complemental strand, 2922313 - 2922251
Alignment:
Q  342 gtgagcaattttacgccactctctccctcgcttcctccgcaaacttgcttcaagtaatggaca 404  Q
    ||||||||| |||||||||| | ||||| |||||||||||| ||||||||| |||||||||||    
T  2922313 gtgagcaatgttacgccactttttcccttgcttcctccgcacacttgcttctagtaatggaca 2922251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 11494047 - 11494089
Alignment:
Q  173 tctacttgaccaacaggaggaagaaatattaagtcaagacagt 215  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  11494047 tctaattgaccaacatgaggaagaaatattaagtcaagacagt 11494089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 391
Target Start/End: Complemental strand, 4133052 - 4133001
Alignment:
Q  340 atgtgagcaattttacgccactctctccctcgcttcctccgcaaacttgctt 391  Q
    ||||||||||| |||||||||||| ||||||||||| || || |||||||||    
T  4133052 atgtgagcaatcttacgccactctttccctcgcttcttctgccaacttgctt 4133001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 28696918 - 28696851
Alignment:
Q  29 taaaacctatcaaagaggaaatttataccttagattccactgctgccattttgatgcaagccatcaat 96  Q
    ||||||| ||||||| |||| ||||||||| |||| |||||| | |||| ||| ||||||||||||||    
T  28696918 taaaaccaatcaaagtggaagtttatacctcagatgccactgttcccatcttggtgcaagccatcaat 28696851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 280 - 437
Target Start/End: Complemental strand, 5991370 - 5991213
Alignment:
Q  280 agagactcacctagacatgaaacttatgtcatcaattcgtcatcaataattatggcaggtatgtgagcaattttacgccactctctccctcgcttcctcc 379  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||| |||| ||||||||| || |||||||| |||||||||||| ||||||||||||||     
T  5991370 agagactcacctagacaggaaacttatgtgatcaattcatcatcgataactatggcaggaatatgagcaatcttacgccactctttccctcgcttcctct 5991271  T
Q  380 gcaaacttgcttcaagtaatggacagcgagtcaaacttagtacagaaagagaggaagg 437  Q
    ||||  ||||| | ||||||||||| ||||| | ||||||||| ||||||||||||||    
T  5991270 gcaactttgctaccagtaatggacaacgagtaatacttagtactgaaagagaggaagg 5991213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 5992122 - 5991979
Alignment:
Q  29 taaaacctatcaaagaggaaatttataccttagattccactgctgccattttgatgcaagccatcaatatcacttgaatccctttgtcgatctgcaaaca 128  Q
    ||||||||||||  |||| |||| || ||| |||| | |||||| | || ||| ||||||||||||||  |||||||| ||||| || ||||||||||||    
T  5992122 taaaacctatca--gagggaattcatgcctgagatgctactgctccgatcttggtgcaagccatcaatcacacttgaagccctt-gtagatctgcaaaca 5992026  T
Q  129 gagtagacataaaataaatcgaaaataaagactaagccaccaaatct 175  Q
      ||||| ||||| ||  ||||||| ||||| |||||| ||||||||    
T  5992025 cggtagagataaattatctcgaaaacaaagaataagccgccaaatct 5991979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 8570958 - 8570891
Alignment:
Q  29 taaaacctatcaaagaggaaatttataccttagattccactgctgccattttgatgcaagccatcaat 96  Q
    ||||||| ||||||| |||| ||||||||| |||| |||||| | |||| ||| ||||||||||||||    
T  8570958 taaaaccaatcaaagtggaagtttatacctcagatgccactgttcccatcttggtgcaagccatcaat 8570891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 54188210 - 54188277
Alignment:
Q  29 taaaacctatcaaagaggaaatttataccttagattccactgctgccattttgatgcaagccatcaat 96  Q
    ||||||| ||||||| |||| ||||||||| |||| |||||| | |||| ||| ||||||||||||||    
T  54188210 taaaaccaatcaaagtggaagtttatacctcagatgccactgttcccatcttggtgcaagccatcaat 54188277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 298 - 437
Target Start/End: Original strand, 2113 - 2252
Alignment:
Q  298 gaaacttatgtcatcaattcgtcatcaataattatggcaggtatgtgagcaattttacgccactctctccctcgcttcctccgcaaacttgcttcaagta 397  Q
    |||||| |||| |||||||| ||||| ||||||||||  || ||||| ||||| |||||||||||| ||||| |||||||||| ||||||||||| ||||    
T  2113 gaaactcatgttatcaattcatcatctataattatggagggaatgtgggcaatcttacgccactctttcccttgcttcctccggaaacttgcttccagta 2212  T
Q  398 atggacagcgagtcaaacttagtacagaaagagaggaagg 437  Q
    |||||||| |||||| | |||| ||  |||||||||||||    
T  2213 atggacagtgagtcatatttagcactaaaagagaggaagg 2252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 343 - 437
Target Start/End: Complemental strand, 16449569 - 16449475
Alignment:
Q  343 tgagcaattttacgccactctctccctcgcttcctccgcaaacttgcttcaagtaatggacagcgagtcaaacttagtacagaaagagaggaagg 437  Q
    |||||||| |||||||||||| ||||||||||||| |||| ||||||||| ||||||||||| ||||||| |||||| || ||||||||||||||    
T  16449569 tgagcaatcttacgccactctttccctcgcttcctgcgcacacttgcttctagtaatggacaccgagtcatacttagcactgaaagagaggaagg 16449475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 16450585 - 16450501
Alignment:
Q  28 ctaaaacctatcaaagaggaaatttataccttagattccactgctgccattttgatgcaagccatcaatatcacttgaatccctt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| ||||||  |||||||| |||||    
T  16450585 ctaaaacctatcaaagaggaaatttataccttagattccactgcggccatcttgttgcaagcaatcaatcccacttgaagccctt 16450501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 437
Target Start/End: Complemental strand, 17314586 - 17314447
Alignment:
Q  298 gaaacttatgtcatcaattcgtcatcaataattatggcaggtatgtgagcaattttacgccactctctccctcgcttcctccgcaaacttgcttcaagta 397  Q
    |||||| |||| ||||| |  ||||| ||||||||||  || ||||||||||| |||||||||||| | ||||||||||||||||||||| |||  || |    
T  17314586 gaaactcatgtgatcaaattatcatcgataattatggagggaatgtgagcaatcttacgccactcttttcctcgcttcctccgcaaactttctttgagca 17314487  T
Q  398 atggacagcgagtcaaacttagtacagaaagagaggaagg 437  Q
     ||| |||||||||| | |||||||  |||||||||||||    
T  17314486 ttgggcagcgagtcatatttagtaccaaaagagaggaagg 17314447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 435
Target Start/End: Complemental strand, 18390885 - 18390743
Alignment:
Q  293 gacatgaaacttatgtcatcaattcgtcatcaataattatggcaggtatgtgagcaattttacgccactctctccctcgcttcctccgcaaacttgcttc 392  Q
    |||| |||| |||| | ||||||||||| |  |||||||||   || ||||||| ||| ||| |||||||| ||||||||||| ||||||||||| ||||    
T  18390885 gacaagaaagttatttgatcaattcgtcgttgataattatgaagggaatgtgagaaatcttatgccactctttccctcgcttcttccgcaaacttccttc 18390786  T
Q  393 aagtaatggacagcgagtcaaacttagtacagaaagagaggaa 435  Q
     | ||||||||| | ||||| | ||||||| ||||||||||||    
T  18390785 caataatggacaacaagtcacatttagtactgaaagagaggaa 18390743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 18391828 - 18391784
Alignment:
Q  29 taaaacctatcaaagaggaaatttataccttagattccactgctg 73  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||    
T  18391828 taaaacctatcaaagaggaattttatacattagattccactgctg 18391784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 3367298 - 3367365
Alignment:
Q  29 taaaacctatcaaagaggaaatttataccttagattccactgctgccattttgatgcaagccatcaat 96  Q
    ||||||| ||||||| |||| ||||||||| |||| |||||| | |||| ||| ||||||||||||||    
T  3367298 taaaaccaatcaaagtggaagtttatacctcagatgccactgttcccatcttggtgcaagccatcaat 3367365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University