View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5062_low_8 (Length: 346)
Name: NF5062_low_8
Description: NF5062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5062_low_8 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 6 - 346
Target Start/End: Complemental strand, 6060775 - 6060435
Alignment:
| Q |
6 |
ctgagatgaaacaaaccagggattctgatgtcaacaattggctcaatgatctcaaagatgctgtatatgtagctgttgacttattggatgaagtttcgac |
105 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
6060775 |
ctgagaagaaacaaaccagggattctgatgtcaacaactggctcaatgatctcaaagatgctgtctatgtagctgatgacttattggatgaagtttcgac |
6060676 |
T |
|
| Q |
106 |
aaaaactgtgattcaaaaagaggtaactaatctcttttcgcgctttttcaatgtgcaagatagggttatggttagtatgtttgaagatatagttgagaga |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
6060675 |
aaaaactgtgattcaaaaagaggtaactaatctcttttcgcgctttttcaatgtgcaagataggggtatggttagtaagtttgaagatatagttgagaga |
6060576 |
T |
|
| Q |
206 |
ctagaatatatcttgaaactcaaagacagtcttgaactcaaagagattgtagtggagaatttgtcatataaaactccatcaacatctctccaagacggat |
305 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6060575 |
ctagaatatattttgaaactcaaagacagtcttgaactcaaagagattgtagtggagaatttgtcatataaaactccatcaacatctctccaagacgaat |
6060476 |
T |
|
| Q |
306 |
cacgtgtgtatggcagggacaaagacaaggagggcatcatc |
346 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6060475 |
ctcgtgtgtatggcagggacaaagacaaggagggcatcatc |
6060435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 41932576 - 41932641
Alignment:
| Q |
29 |
tctgatgtcaacaattggctcaatgatctcaaagatgctgtatatgtagctgttgacttattggat |
94 |
Q |
| |
|
|||| ||| ||||| |||||| ||||||||||||||||||| ||||| |||| |||| | |||||| |
|
|
| T |
41932576 |
tctgctgttaacaaatggctcgatgatctcaaagatgctgtctatgttgctgatgacattttggat |
41932641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University