View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5063-Insertion-12 (Length: 129)

Name: NF5063-Insertion-12
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5063-Insertion-12
NF5063-Insertion-12
[»] chr1 (6 HSPs)
chr1 (10-129)||(9988153-9988272)
chr1 (8-129)||(9993013-9993129)
chr1 (23-73)||(9978567-9978617)
chr1 (25-73)||(9978600-9978648)
chr1 (27-73)||(20432299-20432345)
chr1 (28-73)||(20432362-20432407)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 1e-39; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 9988153 - 9988272
Alignment:
Q  10 ttgaccaaaaaagatggcaaccttttgaccaaaattaaatacaaatggcaacgttttgaccaaannnnnnngacctaaacaaaaccttttgaccataatt 109  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||       ||||||||| |||||||||||||||||||    
T  9988153 ttgaccaaaaaaaatggcaaccttttgaccaaaattaaatacaaatggcagagttttgaccaaatttttttgacctaaactaaaccttttgaccataatt 9988252  T
Q  110 aatgtattttttgaccctaa 129  Q
    ||||||||||||||||||||    
T  9988253 aatgtattttttgaccctaa 9988272  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 9993013 - 9993129
Alignment:
Q  8 ttttgaccaaaaaagatggcaaccttttgaccaaaattaaatacaaatggcaacgttttgaccaaa-nnnnnnngacctaaacaaaaccttttgaccata 106  Q
    |||||| ||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||         |||||||      ||||||||||||    
T  9993013 ttttgagcaaaaaaaatggcaaccttttgaccataattaaatacgaatggcaacgttttgaccaaatttttttttacctaaa------cttttgaccata 9993106  T
Q  107 attaatgtattttttgaccctaa 129  Q
    |||||||||||||||||||||||    
T  9993107 attaatgtattttttgaccctaa 9993129  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 9978567 - 9978617
Alignment:
Q  23 atggcaaccttttgaccaaaattaaatacaaatggcaacgttttgaccaaa 73  Q
    ||||||||||||||||||||| |||||| ||| |||||| |||||||||||    
T  9978567 atggcaaccttttgaccaaaaataaataaaaagggcaaccttttgaccaaa 9978617  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 9978600 - 9978648
Alignment:
Q  25 ggcaaccttttgaccaaaattaaatacaaatggcaacgttttgaccaaa 73  Q
    ||||||||||||||||||| |||||| |||| ||||| |||||||||||    
T  9978600 ggcaaccttttgaccaaaaataaataaaaattgcaactttttgaccaaa 9978648  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 20432299 - 20432345
Alignment:
Q  27 caaccttttgaccaaaattaaatacaaatggcaacgttttgaccaaa 73  Q
    ||||||||||||||||| |||||| ||||||| || |||||||||||    
T  20432299 caaccttttgaccaaaaataaataaaaatggctaccttttgaccaaa 20432345  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 20432362 - 20432407
Alignment:
Q  28 aaccttttgaccaaaattaaatacaaatggcaacgttttgaccaaa 73  Q
    |||||||||||||||| |||||| ||||||| || |||||||||||    
T  20432362 aaccttttgaccaaaaataaataaaaatggctaccttttgaccaaa 20432407  T

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