View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5063-Insertion-14 (Length: 318)
Name: NF5063-Insertion-14
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063-Insertion-14 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 318
Target Start/End: Original strand, 53838790 - 53839100
Alignment:
| Q |
8 |
gtatttgcatcaaacataatggttggagccaaacacatgaataacatttttaaaataaaatacaaaaactaattcaatatcaacattatctcacgtcctc |
107 |
Q |
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| T |
53838790 |
gtatttgcatcaaacataatggttggaaccaaacgcatgaataacatcgttaaaataaaataaaaaaacaaattcaatatcaacattatctcacgtcctc |
53838889 |
T |
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| Q |
108 |
ttatgccatgcctacttgtatatcaaaatcacaaaataataataatccaaataacnnnnnnnctgtgtctttcctctatgttcaccaattttgtgtagcg |
207 |
Q |
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| T |
53838890 |
ttataccatgcctacttgtatatcaaaatcacaaaataataataatccaaataacaagaaaactgtgtctttcctctatgttcaccaattttgtgtagtg |
53838989 |
T |
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| Q |
208 |
tactaaatttgtatgtggcgctacctgtgnnnnnnnnntttgaaaatcaattttgttcaagaagaggtttacaaatttcttgaatgggaggggcattcca |
307 |
Q |
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| T |
53838990 |
tactaaatttgtatgtggcgctacctgtgaaataaaaatttgaaaatcaattttgttcaagaagaggtttacaaatttcttgaatgggaggggcattcca |
53839089 |
T |
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| Q |
308 |
ctgagcagtaa |
318 |
Q |
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| T |
53839090 |
ctgagcagtaa |
53839100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 53831123 - 53831180
Alignment:
| Q |
251 |
aaatcaattttgttcaagaa-gaggtttacaaatttcttgaatgggaggggcattcca |
307 |
Q |
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| T |
53831123 |
aaatcaattttgttgaagaatggggtttacaaatttcttcaatgggaggggcattcca |
53831180 |
T |
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