View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5063-Insertion-17 (Length: 205)
Name: NF5063-Insertion-17
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063-Insertion-17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 47828853 - 47828655
Alignment:
| Q |
7 |
aacatggttgaatttgaatctgtaaagatcttaatccttcgcattgcaacttgcaaagcttcttgagacatattagcaaagcaaatcctaaaccagccag |
106 |
Q |
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| T |
47828853 |
aacatggttgaatttgaatctgtaaagatcttaatccttcgcattgcaacttgcaaagcttcttgagacatattagcaaagcaaatcctaaaccacccag |
47828754 |
T |
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| Q |
107 |
gttcagaacaatgacaagaagatccaggagatatattcaaaccaatttggtaaagaatccttttccaaagctcattctctgcctcaaaagttgcagaac |
205 |
Q |
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| T |
47828753 |
gttcagaacaatgacaagaagatccaggagatatattcaaaccaatttggtaaagaatccttttccaaagctcattctctgcctcaaaagttgcagaac |
47828655 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 42788822 - 42788893
Alignment:
| Q |
75 |
catattagcaaagcaaatcctaaaccagccaggttcagaacaatgacaagaagatccaggagatatattcaa |
146 |
Q |
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| T |
42788822 |
catattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaa |
42788893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 42798360 - 42798431
Alignment:
| Q |
75 |
catattagcaaagcaaatcctaaaccagccaggttcagaacaatgacaagaagatccaggagatatattcaa |
146 |
Q |
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| T |
42798360 |
catattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaa |
42798431 |
T |
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