View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5063-Insertion-2 (Length: 711)
Name: NF5063-Insertion-2
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 635; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 8 - 703
Target Start/End: Complemental strand, 52287967 - 52287270
Alignment:
| Q |
8 |
aaaatgacttcaaaaacactcttagcatgtgacccttcagatggtgattacattgacatggaagttagttcatactcaaaattattcaatcatcattctg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52287967 |
aaaatgacttcaaaaacactcttagcatgtgacccttcagatgatgattacattgacatggaagttagttcatactcaaaattattcaatcatcattctg |
52287868 |
T |
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| Q |
108 |
aaaactctcatccacaacatcctagagagtttgagttccaaatgtcttccattgttcaagagaaagaaccaacaacttcaccagctgatgagcttttcta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52287867 |
aaaactctcatccacaacatcctagagagtttgagttccaaatgtcttccattgttcaagagaaagaaccaacaacttcaccagctgatgagcttttcta |
52287768 |
T |
|
| Q |
208 |
caaaggaaaactcctcccccttcaccttccacctcggttacaaatggttgaaaaactccttcaaaaccctcacaaaccttttgaggttgaaaaagatatc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52287767 |
caaaggaaaactcctcccccttcaccttccacctcggttacaaatggttgaaaaactccttcaaaaccctcacaaaccttttgaggttgaaaaagatatc |
52287668 |
T |
|
| Q |
308 |
tttgaagagttctatagcactccattagccactactacttttacaacgccgatcaccggcacaccatttgagtcctgcaatatttcaccatctgattctt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52287667 |
tttgaagagttctatagcactccattagccactactacttttacaacgccgatcaccggcacaccatttgagtcctgcaatatttcaccatctgattctt |
52287568 |
T |
|
| Q |
408 |
gccaagttagtcgagaactaaatgccgaagagtattataacctcgactaccacacaactgatacaagtggattcgttgttgaaaaccagaagaagtcatg |
507 |
Q |
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| T |
52287567 |
gtcaagttagtcgagaactaaatgccgaagagtattataacctcgactaccacacaacggatacaagtggattcgttgttgaaaaccagaagaagtcatg |
52287468 |
T |
|
| Q |
508 |
gactaagaaactgaaacagtcttctctaggttccaagttaaaggcttcaagagcttatcttaagtcttggtttggaaaatctggctgttcgtatgaaaac |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52287467 |
gactaagaaactgaaacagtcttctctaggttccaagttaaaggcttcaagagcttatcttaagtcttggtttggaaaatctggctgttcctatgaaaac |
52287368 |
T |
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| Q |
608 |
tatgcttc-tcaacaaaagttgctgatgaaggttcagtttcaaaagctaggg-aattctgaataagc-tgttcgaggagcaagtagaagatccatatgg |
703 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |||||||| || || |||||||||| |
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| T |
52287367 |
tatgcttcatcaacaaaagttgctgatgaaggttcagtttcaaaagctagggaaattttgaataagcatgttcaaggagcaaata-aaaatccatatgg |
52287270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 29063005 - 29063048
Alignment:
| Q |
191 |
gctgatgagcttttctacaaaggaaaactcctcccccttcacct |
234 |
Q |
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|||||||| || ||||||||||||||||||||||| |||||||| |
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| T |
29063005 |
gctgatgatctcttctacaaaggaaaactcctccctcttcacct |
29063048 |
T |
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