View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5063-Insertion-3 (Length: 557)
Name: NF5063-Insertion-3
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063-Insertion-3 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 54713959 - 54713732
Alignment:
| Q |
8 |
aatgattctgcatttgtcttcacttttgaagagccaatgaagacttgctaacaaatacaaaattagttacaacatcaatgaagaattcaaatatagaacg |
107 |
Q |
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| T |
54713959 |
aatgattctgcatttgtcttcacttttgaagagccaatgaagacttgctaacaaatacaaaattagttacaacatcaatgaagaattccaatatagaacg |
54713860 |
T |
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| Q |
108 |
ttacggcaattgtttgggttcatcgttatattaaatttattccattaatactaatatgctagatgaatggtcaattttactatgttggagtcaacatctg |
207 |
Q |
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| T |
54713859 |
ttacggcaattgtttgcgttcatcgttatattaaatttattccattaatactaatatgctagatgaatggtcaattttactatgttggagtcaacatctg |
54713760 |
T |
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| Q |
208 |
atgtgttaaatcatatctaccaatcaaa |
235 |
Q |
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| T |
54713759 |
atgtgttaaatcatatctaccaatcaaa |
54713732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 300 - 557
Target Start/End: Complemental strand, 54713461 - 54713200
Alignment:
| Q |
300 |
atttttcgagtggttatacatgaacaaccaccttatatggctaccactctttgtacaccttccacatgtctaaaaaata-tataaaatgatcttatgaaa |
398 |
Q |
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| T |
54713461 |
attttttgagtgattatacatgaac---caccctatgtggctaccactctttgtacaccttccacgtgtctaaaaaaaaatataaaataatcttatgaaa |
54713365 |
T |
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| Q |
399 |
-gtgccatctcataaaagaagacnnnnnnnnn-----ttaagtcccaaccctcagcttctctaaaaacggatctcttctctctccccaccaccatccatt |
492 |
Q |
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| T |
54713364 |
agtgccatctcataaaagaagacaaaaaaaaaaaaaattaagtcccaaccctcatcttctctaaaaacggatctcttctctctccccaccaccatacatt |
54713265 |
T |
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| Q |
493 |
gccatcgccgcaaactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctct |
557 |
Q |
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| T |
54713264 |
gccatcgccgcaaactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctct |
54713200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 54680242 - 54680135
Alignment:
| Q |
31 |
ttttgaagagccaatgaagacttgctaacaaatacaaaattagttacaacatcaatgaagaattcaaatatagaacgttacggcaattgtttgggttcat |
130 |
Q |
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| T |
54680242 |
ttttgaagagccaatgaagaccggctaacaaatacaaaatcagttacaacatcaacgtagaattccaatatagaactttacggcaattgtttgggttcat |
54680143 |
T |
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| Q |
131 |
cgttatat |
138 |
Q |
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| T |
54680142 |
cgttatat |
54680135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 54679973 - 54679876
Alignment:
| Q |
138 |
ttaaatttattccattaatactaatatgctagatgaatggtcaattttactatgttggagtcaacatctgatgtgttaaatcatatctaccaatcaaa |
235 |
Q |
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| T |
54679973 |
ttaaatttattacattaatactacaatgctagatgaagggtcaattttactatgttgtactcaacatctgatgtgttaaatcatatctaccaatcaaa |
54679876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 54713517 - 54713475
Alignment:
| Q |
262 |
tcaaaagggttgaaatctagtttataaatattgcaacaatttt |
304 |
Q |
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| T |
54713517 |
tcaaaagggttgaaatctagtttataaatattgcaacaatttt |
54713475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 54679886 - 54679839
Alignment:
| Q |
256 |
taccaatcaaaagggttgaaatctagtttataaatattgcaacaatttt |
304 |
Q |
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| T |
54679886 |
taccaatcaaaagg-ttgaaatctagtttataaaaattgcaataatttt |
54679839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 307 - 557
Target Start/End: Original strand, 32971718 - 32971965
Alignment:
| Q |
307 |
gagtggttatacatgaacaaccaccttatatggctaccactctttgtacaccttccacatgtctaaaaaatatataaaatgatcttatgaaagtgccatc |
406 |
Q |
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| T |
32971718 |
gagtggttatacatgaac---catcctatgtggctaccactctttgtacacctttcacatgtctaagaaaaatataaa-taatcttatgaaagtgccagc |
32971813 |
T |
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| Q |
407 |
tcataaaagaagacnnnnnnnnnttaagtcccaaccctcagcttctctaaaaacggatctc--ttctctctccccaccaccatccattgccatcgccgca |
504 |
Q |
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| T |
32971814 |
tcataaaagaagacaaaaaaaaattaagtcccaaccctt-gcttctctaaaaacagatctctcttctctctcccaaccgccatccactgccaccgccgca |
32971912 |
T |
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| Q |
505 |
aactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctct |
557 |
Q |
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| T |
32971913 |
aactccgaccacccctccgccccaactccgatttcaacaactcaactctctct |
32971965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 307 - 557
Target Start/End: Complemental strand, 41665254 - 41664998
Alignment:
| Q |
307 |
gagtggttatacatgaacaaccaccttatatggctaccactctttgtacaccttccacatgtctaaaaaata-tataaaatgatcttatgaaagtgccat |
405 |
Q |
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| T |
41665254 |
gagtggttatacatgaac---catcctatgtggctaccactctttgtacaccttccacatgtctaaaaaaaaatataaaataatcttatgaaagtgtcag |
41665158 |
T |
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| Q |
406 |
ctcataaaagaagacnnnnnnnnnt-------taagtcccaaccctcagcttctctaaaaacggatctct-tctctctccccaccaccatccattgccat |
497 |
Q |
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| T |
41665157 |
ctcataaaagaagacaaaaaaaaataaaaaattaagtcctaaccctccgcttctctaaaaacagatctctctttctctccccaccgccatccactgccac |
41665058 |
T |
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| Q |
498 |
cgccgcaaactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctct |
557 |
Q |
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| T |
41665057 |
tgccgcaaactccgaccacccctccgccccagctccgatttcaacaactcaactctctct |
41664998 |
T |
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