View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5063-Insertion-4 (Length: 552)

Name: NF5063-Insertion-4
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5063-Insertion-4
NF5063-Insertion-4
[»] chr7 (12 HSPs)
chr7 (8-503)||(24284125-24284619)
chr7 (17-410)||(24232214-24232600)
chr7 (111-443)||(21199710-21200048)
chr7 (37-442)||(21194383-21194794)
chr7 (20-187)||(3494735-3494901)
chr7 (58-188)||(24121935-24122065)
chr7 (57-157)||(24151055-24151155)
chr7 (17-124)||(24146097-24146203)
chr7 (42-95)||(24132459-24132512)
chr7 (42-191)||(24161089-24161238)
chr7 (57-156)||(24238223-24238322)
chr7 (23-205)||(24154162-24154343)
[»] chr2 (1 HSPs)
chr2 (11-208)||(10988927-10989123)
[»] chr1 (2 HSPs)
chr1 (20-138)||(3151181-3151298)
chr1 (328-416)||(3151479-3151567)


Alignment Details
Target: chr7 (Bit Score: 460; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 8 - 503
Target Start/End: Original strand, 24284125 - 24284619
Alignment:
Q  8 gttgctacagactcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaacaatatttatgcacaaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24284125 gttgctacagactcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaacaatatttatgcacaaat 24284224  T
Q  108 acctgcaaggaaatgctgctgcagccaagaagctctatggaagcttattgtcaaaagctcaaactgaatatagacgacacagaacctttgcagcacttcg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  24284225 acctgcaaggaaatgctgctgcagccaagaagctctatggaagcttattgtcaaaagctccagctgaatatagacgacacagaacctttgcagcacttcg 24284324  T
Q  208 tgtgcgagaactgggattgtgttagaaagcaaagtggagcccgtttgagcatttttaggaatcaaaagtgcagttgtggaaaagtaatgaacctagtaat 307  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24284325 tgtgcgagaactgggattgtgttagaaa-caaagtggagcccgtttgagcatttttaggaatcaaaagtgcagttgtggaaaagtaatgaacctagtaat 24284423  T
Q  308 attcccaccaaaagaatttttgagtttaggaaatggctttgctaaggaaaccgccacatttataatttctgatgatcttactgtgatgcctaatgttttt 407  Q
     |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24284424 gttcccaccaaaagaatttttgagtctaggaaatggctttgctaaggaaaccgccacatttataatttctgatgatcttactgtgatgcctaatgttttt 24284523  T
Q  408 ggaacagttatatcactacttcaaaagcttgaaatcacaaacattggtgctattgttgaagaatctgtcgaaatcagcaagcaagaggcatcctct 503  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  24284524 ggaacagttataccactacttcaaaagcttgaaatcacaaacattggtgctattgttgaagaatctgttgaaatcagcaagcaagaggcatactct 24284619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 17 - 410
Target Start/End: Complemental strand, 24232600 - 24232214
Alignment:
Q  17 gactcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaacaatatttatgcacaaatacctgcaag 116  Q
    ||||||||||||||||||||  ||||| ||||||||||||||| |||||||||||||   | ||||||||||||||||||| | | ||  ||| ||||||    
T  24232600 gactcaaatattgaagcagtgaaattt-ggcagcattagctcattgtatcaaagtgtgtcaaatcttgatcaacaatatttgtcctcacttacttgcaag 24232502  T
Q  117 gaaatgctgctgcagccaagaagctctatggaagcttattgtcaaaagctcaaactgaatatagacgacacagaacctttgcagcacttcgtgtgcgaga 216  Q
    |||||||| ||||| ||||||| ||| ||||||| ||| || | | |||| |||||||||||||||||||| ||||  |||||| |||| ||||||||||    
T  24232501 gaaatgctactgcaaccaagaaactcgatggaagattactgccgacagctgaaactgaatatagacgacactgaacgcttgcagtactttgtgtgcgaga 24232402  T
Q  217 actgggattgtgttagaaagcaaagtggagcccgtttgagcatttttaggaatcaaaagtgcagttgtggaaaagtaatgaacctagtaatattcccacc 316  Q
    |||||||||||   ||||||   |||||   || ||||||| |||||||||| ||||| |||  |||||| ||||||||||||  || | |||||||       
T  24232401 actgggattgtagaagaaaggttagtggctgccttttgagcttttttaggaaccaaaaatgctattgtgggaaagtaatgaacagagaagtattccc--- 24232305  T
Q  317 aaaagaatttttgagtttaggaaatggctttgctaaggaaaccgccacatttataatttctgatgatcttactgtgatgcctaatgtttttgga 410  Q
     ||||  ||||| | | ||| |||||| ||||  |||||||  || || ||||| |||||||||||||||  ||| ||||||||||||||||||    
T  24232304 -aaag--tttttcaatatagaaaatggttttgtgaaggaaaatgctacttttatcatttctgatgatctttgtgttatgcctaatgtttttgga 24232214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 111 - 443
Target Start/End: Original strand, 21199710 - 21200048
Alignment:
Q  111 tgcaaggaaatgctgctgcagccaagaagctctatggaagcttattgtcaaaagctcaaactgaatatagacgacacagaacctttgcagcacttcgtgt 210  Q
    |||||||||||||| ||  ||||||| |  || ||||||||||||||||| ||| | ||||||||||| ||||||||||||||| ||||||||| | | |    
T  21199710 tgcaaggaaatgctactcgagccaaggaattccatggaagcttattgtcagaagatgaaactgaatatcgacgacacagaacctatgcagcactacatct 21199809  T
Q  211 gcgagaactgggattgtgttagaaagcaaagtggagcccgtttgagcatttttaggaatcaaaagtgcagttgtggaaaagtaatgaacctagtaatatt 310  Q
    | | | | |||||||||| ||||||| |||| ||   || ||||||| | ||||||||||||| |||||||||||||| ||||||||||  |||| |||     
T  21199810 gtggggattgggattgtggtagaaaggaaagcgggaaccttttgagcttatttaggaatcaaatgtgcagttgtggaagagtaatgaacaaagtattatc 21199909  T
Q  311 cccacc------aaaagaatttttgagtttaggaaatggctttgctaaggaaaccgccacatttataatttctgatgatcttactgtgatgcctaatgtt 404  Q
     |||||      |  ||||  |||||| |||||||  || |||| ||||||||| ||  ||||||| ||||| || ||||||  ||||||||||||||||    
T  21199910 tccaccgcagcaaccagaaagtttgagcttaggaagcggttttgttaaggaaactgctgcatttattatttcagacgatctttatgtgatgcctaatgtt 21200009  T
Q  405 tttggaacagttatatcactacttcaaaagcttgaaatc 443  Q
    ||||| |||||||||  ||||||||| ||||| ||||||    
T  21200010 tttgggacagttatacaactacttcacaagctggaaatc 21200048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 37 - 442
Target Start/End: Original strand, 21194383 - 21194794
Alignment:
Q  37 tcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaacaatatttatgcacaaatacctgcaaggaaatgctgctgcagccaag 136  Q
    |||| |||||||||||||||||||| |||||||||||   | |||||||| |||||||| |||| ||   ||| |||||||||||||| ||   ||||||    
T  21194383 tcaaatttggcagcattagctcactatatcaaagtgtggcaaatcttgatgaacaatatctatggactcgtacttgcaaggaaatgctacttaggccaag 21194482  T
Q  137 aagctctatggaagcttattgtcaaaagctcaaactgaatatagacgacacagaacctttgcagcacttcgtgtgcgagaactgggattgtgttagaaag 236  Q
    ||  || ||||||  ||||||||| ||| | ||||||||||| ||||||||||||||  || | |||||| | || | ||||||||||||||||||||||    
T  21194483 aaattccatggaaagttattgtcagaagatgaaactgaatatcgacgacacagaacccatgaaacacttcatctgtgggaactgggattgtgttagaaag 21194582  T
Q  237 caaagtggagcccgtttgagcatttttaggaatcaaaagtgcagttgtggaaaagtaatgaacctagtaatattcccacc------aaaagaatttttga 330  Q
     | || ||   || ||||||||| ||||||||||||| ||||||||||||   ||||||| ||  |||| | |  |||||      |   |||  | |||    
T  21194583 gagagagggaaccttttgagcatatttaggaatcaaatgtgcagttgtggtcgagtaatggacaaagtattttctccaccgcctcaactggaaagtctga 21194682  T
Q  331 gtttaggaaatggctttgctaaggaaaccgccacatttataatttctgatgatcttactgtgatgcctaatgtttttggaacagttatatcactacttca 430  Q
    | |||||||  ||  ||| ||||||||| ||  ||||||| ||||| || ||||||  |||||||||||||| ||||||||||||||||  |||||||||    
T  21194683 gattaggaagcgggcttgttaaggaaactgctgcatttattatttccgacgatctttgtgtgatgcctaatgattttggaacagttatacaactacttca 21194782  T
Q  431 aaagcttgaaat 442  Q
    |||||| |||||    
T  21194783 aaagctagaaat 21194794  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 3494901 - 3494735
Alignment:
Q  20 tcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaacaatatttatgcacaaatacctgcaaggaa 119  Q
    |||||||||||||||||  ||||| || |||||||||||||| |||||||||||   | |  |||| ||||||||| ||||  || |||| ||||| |||    
T  3494901 tcaaatattgaagcagtgaaattt-ggtagcattagctcactatatcaaagtgtgtcaaaatttgaccaacaatatctatggtcacatacttgcaaagaa 3494803  T
Q  120 atgctgctgcagccaagaagctctatggaagcttattgtcaaaagctcaaactgaatatagacgacac 187  Q
    ||||| ||  | || |||| ||| ||||||| |||||| || ||||||||||||||||||||||||||    
T  3494802 atgctactcaatcctagaaactcgatggaagattattgccagaagctcaaactgaatatagacgacac 3494735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 188
Target Start/End: Complemental strand, 24122065 - 24121935
Alignment:
Q  58 cactgtatcaaagtgtaaaagatcttgatcaacaatatttatgcacaaatacctgcaaggaaatgctgctgcagccaagaagctctatggaagcttattg 157  Q
    |||| ||||||||||||  |||||||||| |||| ||| ||||  | ||||||||||| |||||||| ||  | || |||| ||| ||||| || |||||    
T  24122065 cactttatcaaagtgtatcagatcttgatgaacactatctatggtccaatacctgcaaagaaatgctactcaaccctagaaactcaatggaggcgtattg 24121966  T
Q  158 tcaaaagctcaaactgaatatagacgacaca 188  Q
    |||| |||||||||||||||| || ||||||    
T  24121965 tcaacagctcaaactgaatattgatgacaca 24121935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 24151155 - 24151055
Alignment:
Q  57 tcactgtatcaaagtgtaaaagatcttgatcaacaatatttatgcacaaatacctgcaaggaaatgctgctgcagccaagaagctctatggaagcttatt 156  Q
    ||||| ||||||||||| ||||||||||||| ||||||| ||||  || |||||||||| |||||||| ||  ||||||||| ||| ||| || ||||||    
T  24151155 tcactatatcaaagtgtgaaagatcttgatccacaatatctatggtcacatacctgcaaagaaatgctacttaagccaagaaactccatgcaaccttatt 24151056  T
Q  157 g 157  Q
    |    
T  24151055 g 24151055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 24146203 - 24146097
Alignment:
Q  17 gactcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaacaatatttatgcacaaatacctgcaag 116  Q
    ||||||||||||||| ||||  ||||| ||||||||||||||| |||||||||||||   ||||||||||  ||||||| | ||  || | |||||||||    
T  24146203 gactcaaatattgaatcagtgaaattt-ggcagcattagctcattgtatcaaagtgtgtcagatcttgatacacaatatctttggtcacacacctgcaag 24146105  T
Q  117 gaaatgct 124  Q
    ||||||||    
T  24146104 gaaatgct 24146097  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 24132512 - 24132459
Alignment:
Q  42 tttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaacaatat 95  Q
    |||||||||||||  ||||||||||||||||| | |||||||||||||||||||    
T  24132512 tttggcagcattaattcactgtatcaaagtgtgacagatcttgatcaacaatat 24132459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 24161238 - 24161089
Alignment:
Q  42 tttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaacaatatttatgcacaaatacctgcaaggaaatgctgctgcagccaagaagct 141  Q
    |||||||||||||| |||||||| | ||||||   |||||| |||  ||| ||| | ||  |||||||||||| | ||||||| ||  | || |||| ||    
T  24161238 tttggcagcattagttcactgtacctaagtgtgtcagatctcgatgcacagtatctctggtcaaatacctgcaggaaaatgctactcaatcccagaaact 24161139  T
Q  142 ctatggaagcttattgtcaaaagctcaaactgaatatagacgacacagaa 191  Q
    |||||||||||||||| |||||| | ||| ||||||| ||||| ||||||    
T  24161138 ctatggaagcttattgccaaaagatgaaattgaatattgacgaaacagaa 24161089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 24238223 - 24238322
Alignment:
Q  57 tcactgtatcaaagtgtaaaagatcttgatcaacaatatttatgcacaaatacctgcaaggaaatgctgctgcagccaagaagctctatggaagcttatt 156  Q
    |||||| |||||||||||  |||||||||| |||||||| | || ||  || |||||||||||||||| ||  ||||||| | ||| ||||||| |||||    
T  24238223 tcactgcatcaaagtgtagcagatcttgatgaacaatatctctggacgcatgcctgcaaggaaatgctactcaagccaaggaactccatggaagtttatt 24238322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 24154343 - 24154162
Alignment:
Q  23 aatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaacaatatttatgcacaaatacctgcaaggaaatg 122  Q
    ||||||||||||||| |||||    |||||||| |||||||||||||||||   ||||||| |  || ||||| |||| |  ||  | ||||| ||||||    
T  24154343 aatattgaagcagttaaatttaat-agcattagttcactgtatcaaagtgtttcagatcttaaagaagaatatctatggaataaagcttgcaaagaaatg 24154245  T
Q  123 ctgctgcagccaagaagctctatggaagcttattgtcaaaagctcaaactgaatatagacgacacagaacctttgcagcactt 205  Q
    ||  |  ||||| | | ||| |||||||||||||||||  | ||||||||||| || ||||| |||||||| |||||| ||||    
T  24154244 ctaatcaagccagggaactcaatggaagcttattgtcatcaactcaaactgaacatcgacgaaacagaacccttgcagtactt 24154162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 10988927 - 10989123
Alignment:
Q  11 gctacagactcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaacaatatttatgcacaaatacc 110  Q
    |||||||| |||||||||||||||||||||||| || |||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| |   | |||    
T  10988927 gctacagagtcaaatattgaagcagttcaattt-ggtagcattagttcactatatcaaagtgtgaaagatcttgatcagcaatatttatggaatcaaacc 10989025  T
Q  111 tgcaaggaaatgctgctgcagccaagaagctctatggaagcttattgtcaaaagctcaaactgaatatagacgacacagaacctttgcagcacttcgt 208  Q
    |||||  ||||||| ||| ||||||||| ||||| |||| ||||||| || |||||||| || |||||||||||||||||||| ||||||||||||||    
T  10989026 tgcaaaaaaatgctactgaagccaagaaactctacggaaacttattgccagaagctcaatctcaatatagacgacacagaaccattgcagcacttcgt 10989123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 3151181 - 3151298
Alignment:
Q  20 tcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaacaatatttatgcacaaatacctgcaaggaa 119  Q
    |||||||||||||||||  || || |||||||| |||||| |||||| | |||||   |||||||||||||||||| ||||  || |  | ||||| |||    
T  3151181 tcaaatattgaagcagtgaaactt-ggcagcataagctcattgtatcgaggtgtatcggatcttgatcaacaatatctatggtcacaggcatgcaaagaa 3151279  T
Q  120 atgctgctgcagccaagaa 138  Q
    |||||||||||||||||||    
T  3151280 atgctgctgcagccaagaa 3151298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 416
Target Start/End: Original strand, 3151479 - 3151567
Alignment:
Q  328 tgagtttaggaaatggctttgctaaggaaaccgccacatttataatttctgatgatcttactgtgatgcctaatgtttttggaacagtt 416  Q
    ||||||||||||||||||||| | | ||||| || || ||||| ||||| || ||||||  |||||||||||||||||| | |||||||    
T  3151479 tgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatctttttgtgatgcctaatgttttggcaacagtt 3151567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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