View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5063-Insertion-5 (Length: 548)
Name: NF5063-Insertion-5
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063-Insertion-5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 12 - 548
Target Start/End: Complemental strand, 43092407 - 43091871
Alignment:
| Q |
12 |
ttctcttgtttttgtaactgcagtagaagaacccaattttctcttgtaatcctacttttgggtgttggaattgcaacaatcactgatttacaactcaatg |
111 |
Q |
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| T |
43092407 |
ttctcttgtttttgtaaatgcagtagaagaacccaattttctcttgtaatcctacttttgggtgttggaattgcaacaatcactgatttacaactcaatg |
43092308 |
T |
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| Q |
112 |
cgttgggctctttcttgtcttttctggcagtgataacaacgtgtgttgctcaaattgtatccttaaagaaaatttcactcctgttaactgctctgatttt |
211 |
Q |
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| T |
43092307 |
cgttgggctctttcttgtcttttctggcagtgataacaacatgtgttgctcaaattgtatccttaaagaaaatttcactcctgttaactgctatggtttt |
43092208 |
T |
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| Q |
212 |
taaaatggccgatattttatcagttgtgctttcgtgtgtgtgcagtgatgttcaatcttatgaaattatttttaacgatgaatatgttgctaacaacaca |
311 |
Q |
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| T |
43092207 |
taaaatggccgatattttgtcagttgtgttttcgtgtgtgtgcagtgatgttcaatcttatgaatttatttttaacgatgaatatgttgctaacaacaca |
43092108 |
T |
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| Q |
312 |
gggaaaagtgttacataaatgcatattcttattcctataaatttgttcttgggataatcatttcaccaacttcataacaacaaacattttatctaagctt |
411 |
Q |
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| T |
43092107 |
gggaaaagtgttacataaatgcatattcttattcctataaatttgttcttgagataatcatttcgccaacttcataacaacaaacattttacctaagctt |
43092008 |
T |
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| Q |
412 |
ccctttgtatgtgagatgacaaatatcttctacattaatgcaacttatattttctcttattatggaaaagtaaaattctgcaaactttacatgtcttata |
511 |
Q |
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| T |
43092007 |
ccctttgtatgtgagatgacaaatatcttctacattaatgcaacttatattttctcttattatggaaaagtaaaattctgcaaactttacatgtcttata |
43091908 |
T |
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| Q |
512 |
ttatctccagttttatgtaaaagtttgcatgcatata |
548 |
Q |
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| T |
43091907 |
ttatctccagttttatgtaaaagtttgcatgcatata |
43091871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 43084811 - 43084703
Alignment:
| Q |
70 |
tgggtgttggaattgcaacaatcactgatttacaactcaatgcgttgggctctttcttgtcttttctggcagtgataacaacgtgtgttgctcaaattgt |
169 |
Q |
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| T |
43084811 |
tgggtgttggaattgcaacagtcacagatttgcagttgaatgctctgggatctttcttatctcttctggcggtgattacaacatgtgttgctcagattgt |
43084712 |
T |
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| Q |
170 |
atccttaaa |
178 |
Q |
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| T |
43084711 |
atccttaaa |
43084703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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