View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5063-Insertion-7 (Length: 504)
Name: NF5063-Insertion-7
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063-Insertion-7 |
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| [»] chr1 (6 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 148 - 504
Target Start/End: Complemental strand, 15885268 - 15884912
Alignment:
| Q |
148 |
atgttcaatgatgatattttccagtatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaa |
247 |
Q |
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||||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |
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| T |
15885268 |
atgttcaatgatgatgttttctagtattcgatcaatacgtctatgcaacctctcaagtttaggcctcaaaccggaaacaagttgaatccatttagatgaa |
15885169 |
T |
|
| Q |
248 |
ggaaacagttcaccaatgtcaaaacctcctgcaattgattctcccttccccaaccacgcgaactcttcttggtctttgcatttgtttccaaacgcagcct |
347 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15885168 |
ggaaacagttcacctatgtcaaaacctccagcaattgattctcccttccccaaagacgcgaactcttcttggtctttgcatttgtttccaaatgcagccc |
15885069 |
T |
|
| Q |
348 |
tcgaaaggatagcaaacgttgatgaaactacaagttcagtgaggttgatggatgaaccttgcttggaaccaattcttttgatgagattggtaagcacttc |
447 |
Q |
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| T |
15885068 |
ttgaaaggatagcaaatgtcgatgaaactacaagttcagtgaggttgatggatgacccttgcttcgaaccaatccttttgatgagattggtaaacacttc |
15884969 |
T |
|
| Q |
448 |
ttctcttattggcttgaatgaactcacacgtttttgtgataaaagctccattgtgca |
504 |
Q |
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|||||||||||| | ||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
15884968 |
ttctcttattggatggaatgaactcacatgtttttgcgataaaagctccattgtgca |
15884912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 148 - 483
Target Start/End: Original strand, 12637780 - 12638115
Alignment:
| Q |
148 |
atgttcaatgatgatattttccagtatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaa |
247 |
Q |
| |
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||||||| ||||||| ||| | | |||| |||||||| |||||||||| ||||| ||||| ||| ||||||||||| ||||||||||||||||||||| |
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| T |
12637780 |
atgttcattgatgatgtttactaatataagatcaatttgtctatgcaatacctcaattttagacctgaaaccagaaactagttgaagccatttagctgaa |
12637879 |
T |
|
| Q |
248 |
ggaaacagttcaccaatgtcaaaacctcctgcaattgattctcccttccccaaccacgcgaactcttcttggtctttgcatttgtttccaaacgcagcct |
347 |
Q |
| |
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||||||| |||||| ||||||||||||||| ||| ||||||||| || ||||| | ||| || ||||||| |||||||||||||||||||||||||| |
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| T |
12637880 |
ggaaacaattcacctatgtcaaaacctcctccaactgattctccatttgccaacgatacgagctgttcttggcctttgcatttgtttccaaacgcagccc |
12637979 |
T |
|
| Q |
348 |
tcgaaaggatagcaaacgttgatgaaactacaagttcagtgaggttgatggatgaaccttgcttggaaccaattcttttgatgagattggtaagcacttc |
447 |
Q |
| |
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| | | |||| | |||||| |||||| || ||||| |||||||| ||| ||||| | ||| |||| ||||||||||||||||| | | |||| |
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| T |
12637980 |
ttgtagtaatagtcataattgatgtaactacggcttgagtgatgttgatgggtgatccttgttgtgaatcaatacttttgatgagattggtgaactcttc |
12638079 |
T |
|
| Q |
448 |
ttctcttattggcttgaatgaactcacacgtttttg |
483 |
Q |
| |
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||||||||| ||| ||||||||| ||||||||||| |
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| T |
12638080 |
ttctcttataggccggaatgaactaacacgtttttg |
12638115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 164 - 504
Target Start/End: Original strand, 12610796 - 12611136
Alignment:
| Q |
164 |
ttttccagtatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaacagttcaccaa |
263 |
Q |
| |
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||||| ||||| ||||||||| | |||||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||||| | |||| | | |
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| T |
12610796 |
ttttctagtatttgatcaatttgcctatgcaacctctccagtttaggcctcaaaccggaaacacgttgaagccatttcgctgaaggaaataattcagcta |
12610895 |
T |
|
| Q |
264 |
tgtcaaaacctcctgcaattgattctcccttccccaaccacgcgaactcttcttggtctttgcatttgtttccaaacgcagccttcgaaaggatagcaaa |
363 |
Q |
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|||||||||||||||||||||||||||| | || | | | ||||||||| | |||||| |||| | |||||||||||||| | || ||||| ||| |
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| T |
12610896 |
tgtcaaaacctcctgcaattgattctccatctccaatagatccaaactcttctctgcctttgcctttgctgccaaacgcagcctttgtaatgatagaaaa |
12610995 |
T |
|
| Q |
364 |
cgttgatgaaactacaagttcagtgaggttgatggatgaaccttgcttggaaccaattcttttgatgagattggtaagcacttcttctcttattggcttg |
463 |
Q |
| |
|
||||||||||||||||| | ||| | |||| || || ||||| | ||| |||| |||| | ||||||| ||||| |||||||||||||||| | |
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| T |
12610996 |
tgttgatgaaactacaagctgagttatattgacgggcgacccttgttgcgaatcaatcttttttacgagattgttaagctcttcttctcttattggttga |
12611095 |
T |
|
| Q |
464 |
aatgaactcacacgtttttgtgataaaagctccattgtgca |
504 |
Q |
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| T |
12611096 |
aacgaactaacacgcttttgtgtgaaaagctccattgtgca |
12611136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 15885403 - 15885317
Alignment:
| Q |
10 |
tacagccttgatgttgttgtcagttaagcatatatctttgtcattatcatttccaccttggaattttagaagaacgtcaaccaaatc |
96 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| | || |||| ||||||||||||||||||||||||| |
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| T |
15885403 |
tacagccttgatgttgttgtcagttaagcatatatctttttcattatcattgcgacgttggtattttagaagaacgtcaaccaaatc |
15885317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 12637649 - 12637725
Alignment:
| Q |
8 |
attacagccttgatgttgttgtcagttaagcatatatctttgtcattatcatttccaccttggaattttagaagaac |
84 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||||||||| |||| ||||||| |||||||| |||||| ||||||| |
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| T |
12637649 |
attatagccttgatattgttgtcagttaagcatatatcttggtcaatatcattaccaccttgaaatttttgaagaac |
12637725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 12610651 - 12610727
Alignment:
| Q |
16 |
cttgatgttgttgtcagttaagcatatatctttgtcattatcatttccaccttggaattttagaagaacgtcaacca |
92 |
Q |
| |
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|||||| ||||| |||||||| |||||||||| || | ||||| |||||||||||||||||||||||||| |||| |
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| T |
12610651 |
cttgatattgttatcagttaaacatatatcttggttgctgtcattaccaccttggaattttagaagaacgtctacca |
12610727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 148 - 469
Target Start/End: Original strand, 62913 - 63234
Alignment:
| Q |
148 |
atgttcaatgatgatattttccagtatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaa |
247 |
Q |
| |
|
||||| ||||| ||| ||||| ||||| ||||||| | ||||||||||||||| |||||||||||| | | | | ||||||||||||||| |||||| |
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| T |
62913 |
atgttgaatgacgatgttttcaagtatctgatcaagttgtctatgcaacctcttaagtttaggcctttgattaaatataagttgaagccatttggctgaa |
63012 |
T |
|
| Q |
248 |
ggaaacagttcaccaatgtcaaaacctcctgcaattgattctcccttccccaaccacgcgaactcttcttggtctttgcatttgtttccaaacgcagcct |
347 |
Q |
| |
|
||||| | |||| || |||||||||||| |||||||| || || ||||| |||| |||| ||||||| |||||||||||| |||||||||||| |
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| T |
63013 |
ggaaataattcaattatttcaaaacctcctccaattgatcctatatttcccaatgacgcaaactgttcttgggctttgcatttgtcgccaaacgcagccc |
63112 |
T |
|
| Q |
348 |
tcgaaaggatagcaaacgttgatgaaactacaagttcagtgaggttgatggatgaaccttgcttggaaccaattcttttgatgagattggtaagcacttc |
447 |
Q |
| |
|
| |||| ||||| || | ||| || || |||||||||||||| ||||| | | ||||| | || |||| |||||||||||||||| ||| |||| |
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| T |
63113 |
ttgaaatgatagaaatcattgttgtaagtacaagttcagtgatgttgacaggcaatccttgttgcaaatcaatccttttgatgagattggagagctcttc |
63212 |
T |
|
| Q |
448 |
ttctcttattggcttgaatgaa |
469 |
Q |
| |
|
||||||||||||| ||||||| |
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| T |
63213 |
ttctcttattggccggaatgaa |
63234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 282
Target Start/End: Complemental strand, 5752 - 5626
Alignment:
| Q |
156 |
tgatgatattttccagtatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaacag |
255 |
Q |
| |
|
||||||| ||||| ||||| |||||| || ||| ||| | | ||||||| |||||||||||||||| ||| |||| ||||||||||| || ||||||| |
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|
| T |
5752 |
tgatgatgttttcaagtatttgatcagtttgtcgatgaagcatctcaagcttaggcctcaaaccagtaacttgttgtagccatttagcagatggaaacaa |
5653 |
T |
|
| Q |
256 |
ttcaccaatgtcaaaacctcctgcaat |
282 |
Q |
| |
|
|| || | |||||||||||||||||| |
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|
| T |
5652 |
atctcccaagtcaaaacctcctgcaat |
5626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 281
Target Start/End: Original strand, 23146686 - 23146811
Alignment:
| Q |
156 |
tgatgatattttccagtatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaacag |
255 |
Q |
| |
|
||||||| ||||| | ||| |||||| || ||| ||| ||||||||||| |||||||||| ||||| |||||| || | |||||||||||| ||||||| |
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|
| T |
23146686 |
tgatgatgttttcaaatatctgatcagtttgtcgatgaaacctctcaagcttaggcctcataccagtaacaagctgtaaccatttagctgagggaaacaa |
23146785 |
T |
|
| Q |
256 |
ttcaccaatgtcaaaacctcctgcaa |
281 |
Q |
| |
|
|| || | ||||||||| ||||||| |
|
|
| T |
23146786 |
atctcccaagtcaaaaccccctgcaa |
23146811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 23039811 - 23039909
Alignment:
| Q |
156 |
tgatgatattttccagtatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaaca |
254 |
Q |
| |
|
||||||| ||||| | ||| |||||| || ||| ||| ||||||||||| |||||||||| ||||| |||||| || | |||||||||||| ||||||| |
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|
| T |
23039811 |
tgatgatgttttctaatatctgatcagtttgtcgatgaaacctctcaagcttaggcctcataccagtaacaagctgtaaccatttagctgagggaaaca |
23039909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 23033659 - 23033743
Alignment:
| Q |
198 |
tctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaacagttcaccaatgtcaaaacctcctgcaat |
282 |
Q |
| |
|
||||||| |||||||| | ||||| |||| ||||||||||||||| |||||||||| || || | || ||||||||||||||| |
|
|
| T |
23033659 |
tctcaagcttaggcctaataccagtaacatgttgaagccatttagaagaaggaaacaaatctcccaagttaaaacctcctgcaat |
23033743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 23036934 - 23037032
Alignment:
| Q |
156 |
tgatgatattttccagtatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaaca |
254 |
Q |
| |
|
||||||| ||||| | ||| |||||| || ||| ||| | |||||| || |||||||||||||||| || | | || |||||||||||||| ||||||| |
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|
| T |
23036934 |
tgatgatgttttctaatatctgatcagtttgtcgatgaatcctctccagcttaggcctcaaaccagtaatacgctgtagccatttagctgagggaaaca |
23037032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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