View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5063-Insertion-9 (Length: 426)
Name: NF5063-Insertion-9
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063-Insertion-9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 426
Target Start/End: Complemental strand, 10884333 - 10883914
Alignment:
| Q |
8 |
tgttcatcttactcttgcctctttcctactacaaattgtgaatcccaattttgcactgggtgactgcatatcatgnnnnnnnngaagaagtatatcatag |
107 |
Q |
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| T |
10884333 |
tgttcatcttattcttgcatctttcctactacaaattgtgaatcccaattttgcactgggtgactgcatatcatgttttctttgaagaagtatatcatag |
10884234 |
T |
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| Q |
108 |
tattattaattatccatcaaatagatttttagcgcaacagttggattgtttgtgtgtaattagatggtcacagtttcgagtagcgaaatcagcctcttgc |
207 |
Q |
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| T |
10884233 |
tattattaattatccatcaaatagatttttagcgcaacagttggattgtttgtgtgtaattagatggtcacagtttcgagtagcgaaatcagcctcttgc |
10884134 |
T |
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| Q |
208 |
aaatataagataaaaggctatcccatcatcaaggtagctttaaggaaccaagctgttattgttaatcacaagtaaattgagttggtatatggaattcgta |
307 |
Q |
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| T |
10884133 |
aaatataagataaaaggctatcccatcatcaaggtagctttaaggaaccaagctgttattgttaatcagaagtaaattgagttggtatatggaattcgta |
10884034 |
T |
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| Q |
308 |
atcgacattctgaaagcttctttttgaacaaaggagttcctgtgctagtaaagtt-cacttttattatgtgctgctcagtcacactgttgtaaaatttac |
406 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10884033 |
atcgacattctgaaagcttcttgttgaacaaaagagttcctgtgctagtaaagttccacttttattatgtgctgctcagtcacactgttgtaaaatttac |
10883934 |
T |
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| Q |
407 |
aacttgtttgtgttttatga |
426 |
Q |
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| T |
10883933 |
aacttgcttgtgttttatga |
10883914 |
T |
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