View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5063_high_10 (Length: 393)
Name: NF5063_high_10
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 4560278 - 4559906
Alignment:
| Q |
18 |
aatttctaatgaacaatatannnnnnnnnatatgtctaagatgaaagctttaattgctttacctttagaacgacccctactataaaacaagaacaaaaaa |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4560278 |
aatttctaatgaacaatatattttttttgatatgtctaagatgaaagctttaactgctttacctttagaccgacccctactataaaacaagaacaaaaaa |
4560179 |
T |
|
| Q |
118 |
-cgatagggtaaattgaggtggttcatatgtcataaatgaaatagattgctcgaagatgttcctgtataatagttatgaaaaatcatttcttgaaatcac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4560178 |
acgatagggtaaattgaggtggttcatatgtcataaatgaaatagattgatcgaagatgttcctgtataatagttatgaaaaatcatttcttgaaatcac |
4560079 |
T |
|
| Q |
217 |
aatgatgtttacaattgattatttgctgctaatcatgagatgaacagcagtatcacaagcaatacaataccagttactttcatccttttgctagctactg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4560078 |
aatgatgtttacaattgattatttgctgctaatcatgagatgaacagcagtatcacaagcaatacaatatcagttactttcatccttttgctagctactg |
4559979 |
T |
|
| Q |
317 |
tggcaaacattgtatagatactttaggagg----gagtagatcttcgcggctcttatagttaactttcatctc |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4559978 |
tggcaaacattgtatagatactttaggagggagtgagtagttcttcgcggctcttatagttaactttcatctc |
4559906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 384
Target Start/End: Complemental strand, 4566420 - 4566343
Alignment:
| Q |
311 |
ctactgtggcaaacattgtatagata----ctttaggagggagtagatcttcgcggctcttatagttaactttcatct |
384 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||| ||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
4566420 |
ctactctggcaaacattgtatagatagatactttaggagggaatagttctttgcggctcttatagttaactttaatct |
4566343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 182 - 384
Target Start/End: Original strand, 31904922 - 31905122
Alignment:
| Q |
182 |
tataatagttatgaaaaatcatttcttgaaatcacaatgatgtttacaattgattatttgctgctaatcatgagatgaacagcagtatcacaagcaatac |
281 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| |||| || |||||||| |||||| |
|
|
| T |
31904922 |
tataatggttatgaaaaatcatttcttgaaatcacaatg-----tacaattgattact---tgctaatcatgagatcaacaacaatatcacaaacaatac |
31905013 |
T |
|
| Q |
282 |
aataccagttactttcatccttttgct----agct--actgtggcaaacattgtatagatactttaggagggagtagatcttcgcggctcttatagttaa |
375 |
Q |
| |
|
||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
31905014 |
aataccagttactttcatccttttgctcaggagtttgcttgtggcaaactttgtatagatactttaggagggagtagttctttgcggctcttatagttaa |
31905113 |
T |
|
| Q |
376 |
ctttcatct |
384 |
Q |
| |
|
||||||||| |
|
|
| T |
31905114 |
ctttcatct |
31905122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University